/*
* Copyright 2006-2016 The MZmine 3 Development Team
*
* This file is part of MZmine 3.
*
* MZmine 3 is free software; you can redistribute it and/or modify it under the terms of the GNU
* General Public License as published by the Free Software Foundation; either version 2 of the
* License, or (at your option) any later version.
*
* MZmine 3 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
* even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* General Public License for more details.
*
* You should have received a copy of the GNU General Public License along with MZmine 3; if not,
* write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301
* USA
*/
package io.github.mzmine.parameters.parametertypes.tolerances;
import javax.annotation.Nonnull;
import javax.annotation.Nullable;
import org.w3c.dom.Element;
import io.github.msdk.util.tolerances.RTTolerance;
import io.github.mzmine.parameters.ParameterValidator;
import io.github.mzmine.parameters.parametertypes.AbstractParameter;
public class RTToleranceParameter extends AbstractParameter<RTTolerance> {
public RTToleranceParameter(@Nonnull String name, @Nonnull String description,
@Nonnull String category) {
this(name, description, category, null, null);
}
public RTToleranceParameter(@Nonnull String name, @Nonnull String description,
@Nonnull String category, RTTolerance defaultValue) {
this(name, description, category, null, defaultValue);
}
public RTToleranceParameter(@Nonnull String name, @Nonnull String description,
@Nonnull String category, @Nullable ParameterValidator<RTTolerance> validator) {
this(name, description, category, validator, null);
}
public RTToleranceParameter(@Nonnull String name, @Nonnull String description,
@Nonnull String category, @Nullable ParameterValidator<RTTolerance> validator,
@Nullable RTTolerance defaultValue) {
super(name, description, category, RTToleranceEditor.class, validator);
setValue(defaultValue);
}
@Override
public @Nonnull RTToleranceParameter clone() {
RTToleranceParameter copy = new RTToleranceParameter(getName(), getDescription(), getCategory(),
getValidator(), getValue());
return copy;
}
@Override
public void loadValueFromXML(@Nonnull Element xmlElement) {
String typeAttr = xmlElement.getAttribute("type");
Boolean isAbsolute = !typeAttr.equals("percent");
Double content = Double.parseDouble(xmlElement.getTextContent());
setValue(new RTTolerance(content, isAbsolute));
}
@SuppressWarnings("null")
@Override
public void saveValueToXML(@Nonnull Element xmlElement) {
if (getValue() == null)
return;
if (getValue().isAbsolute()) {
xmlElement.setAttribute("type", "absolute");
} else {
xmlElement.setAttribute("type", "percent");
}
Double value = getValue().getTolerance();
xmlElement.setTextContent(value.toString());
}
}