MZmineRunnableModule.java

/*
 * Copyright 2006-2016 The MZmine 3 Development Team
 * 
 * This file is part of MZmine 3.
 * 
 * MZmine 3 is free software; you can redistribute it and/or modify it under the terms of the GNU
 * General Public License as published by the Free Software Foundation; either version 2 of the
 * License, or (at your option) any later version.
 * 
 * MZmine 3 is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without
 * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 * General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License along with MZmine 3; if not,
 * write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301
 * USA
 */

package io.github.mzmine.modules;

import java.util.Collection;

import javax.annotation.Nonnull;

import io.github.mzmine.parameters.ParameterSet;
import io.github.mzmine.project.MZmineProject;
import javafx.concurrent.Task;

/**
 * Interface representing a module that can be executed from the GUI through a menu item. This can
 * be either a data processing method (@see MZmineProcessingModule) or a visualization/data analysis
 * method.
 */
public interface MZmineRunnableModule extends MZmineModule {

  /**
   * Returns a brief module description for quick tooltips in the GUI
   * 
   * @return Module description
   */
  @Nonnull
  public String getDescription();

  /**
   * Run this module with given parameters. The module may create new Tasks and add them to the
   * 'tasks' collection. The module is not supposed to submit the tasks to the TaskController by
   * itself.
   * 
   * @param parameters ParameterSet to invoke this module with. The ParameterSet has already been
   *        cloned for exclusive use by this module, therefore the module does not need to clone it
   *        again. Upon invocation of the runModule() method it is guaranteed that the ParameterSet
   *        is of the proper class as returned by getParameterSetClass(). Also, it is guaranteed
   *        that the ParameterSet is checked by checkParameters(), therefore the module does not
   *        need to perform these checks again.
   * @param tasks A collection where the module should add its newly created Tasks, if it creates
   *        any.
   */
  public void runModule(@Nonnull MZmineProject project, @Nonnull ParameterSet parameters,
      @Nonnull Collection<Task<?>> tasks);

}