/** * Licensed to the Apache Software Foundation (ASF) under one or more * contributor license agreements. See the NOTICE file distributed with * this work for additional information regarding copyright ownership. * The ASF licenses this file to You under the Apache License, Version 2.0 * (the "License"); you may not use this file except in compliance with * the License. You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */ package org.apache.mahout.clustering.spectral.kmeans; import java.util.Collection; import java.util.HashSet; import java.util.List; import org.apache.hadoop.conf.Configuration; import org.apache.hadoop.fs.FileSystem; import org.apache.hadoop.fs.Path; import org.apache.hadoop.mapreduce.Job; import org.apache.mahout.clustering.Cluster; import org.apache.mahout.clustering.ClusteringTestUtils; import org.apache.mahout.clustering.iterator.ClusterWritable; import org.apache.mahout.clustering.spectral.kmeans.EigenSeedGenerator; import org.apache.mahout.common.MahoutTestCase; import org.apache.mahout.common.distance.ManhattanDistanceMeasure; import org.apache.mahout.common.iterator.sequencefile.SequenceFileValueIterable; import org.apache.mahout.math.RandomAccessSparseVector; import org.apache.mahout.math.Vector; import org.apache.mahout.math.VectorWritable; import org.junit.Before; import org.junit.Test; import com.google.common.collect.Lists; public final class TestEigenSeedGenerator extends MahoutTestCase { private static final double[][] RAW = {{1, 0, 0}, {1, 0, 0}, {0, 1, 0}, {0, 1, 0}, {0, 1, 0}, {0, 0, 1}, {0, 0, 1}}; private FileSystem fs; private static List<VectorWritable> getPoints() { List<VectorWritable> points = Lists.newArrayList(); for (double[] fr : RAW) { Vector vec = new RandomAccessSparseVector(fr.length); vec.assign(fr); points.add(new VectorWritable(vec)); } return points; } @Override @Before public void setUp() throws Exception { super.setUp(); Configuration conf = getConfiguration(); fs = FileSystem.get(conf); } @Test public void testEigenSeedGenerator() throws Exception { List<VectorWritable> points = getPoints(); Job job = new Job(); Configuration conf = job.getConfiguration(); job.setMapOutputValueClass(VectorWritable.class); Path input = getTestTempFilePath("eigen-input"); Path output = getTestTempDirPath("eigen-output"); ClusteringTestUtils.writePointsToFile(points, input, fs, conf); EigenSeedGenerator.buildFromEigens(conf, input, output, 3, new ManhattanDistanceMeasure()); int clusterCount = 0; Collection<Integer> set = new HashSet<Integer>(); Vector v[] = new Vector[3]; for (ClusterWritable clusterWritable : new SequenceFileValueIterable<ClusterWritable>( new Path(output, "part-eigenSeed"), true, conf)) { Cluster cluster = clusterWritable.getValue(); int id = cluster.getId(); assertTrue(set.add(id)); // validate unique id's v[id] = cluster.getCenter(); clusterCount++; } assertEquals(3, clusterCount); // validate sample count // validate pair-wise orthogonality assertEquals(0, v[0].dot(v[1]), 1E-10); assertEquals(0, v[1].dot(v[2]), 1E-10); assertEquals(0, v[0].dot(v[2]), 1E-10); } }