/* * Copyright (c) 2016, Metron, Inc. * All rights reserved. * * Redistribution and use in source and binary forms, with or without * modification, are permitted provided that the following conditions are met: * * Redistributions of source code must retain the above copyright * notice, this list of conditions and the following disclaimer. * * Redistributions in binary form must reproduce the above copyright * notice, this list of conditions and the following disclaimer in the * documentation and/or other materials provided with the distribution. * * Neither the name of Metron, Inc. nor the * names of its contributors may be used to endorse or promote products * derived from this software without specific prior written permission. * * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE * DISCLAIMED. IN NO EVENT SHALL METRON, INC. BE LIABLE FOR ANY * DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */ package com.metsci.glimpse.dnc; import static com.metsci.glimpse.util.GeneralUtils.compareInts; import static java.lang.String.CASE_INSENSITIVE_ORDER; import it.unimi.dsi.fastutil.chars.Char2IntMap; import it.unimi.dsi.fastutil.chars.Char2IntOpenHashMap; import it.unimi.dsi.fastutil.objects.Object2IntMap; import it.unimi.dsi.fastutil.objects.Object2IntOpenHashMap; import java.util.Comparator; import com.metsci.glimpse.dnc.DncChunks.DncGroup; public class DncPainterUtils { public static final Comparator<DncGroup> groupRenderingOrder = new Comparator<DncGroup>( ) { public int compare( DncGroup a, DncGroup b ) { int libraryComparison = libraryRenderingOrder.compare( a.chunkKey.library, b.chunkKey.library ); if ( libraryComparison != 0 ) return libraryComparison; int priorityComparison = compareInts( a.geosymAssignment.displayPriority, b.geosymAssignment.displayPriority ); if ( priorityComparison != 0 ) return priorityComparison; // We happen to want delineations in alphabetical order: Area, Line, Point int delineationComparison = CASE_INSENSITIVE_ORDER.compare( a.geosymAssignment.delineation, b.geosymAssignment.delineation ); if ( delineationComparison != 0 ) return delineationComparison; // Which row appeared first in the assignment file int assignmentIdComparison = compareInts( a.geosymAssignment.id, b.geosymAssignment.id ); return assignmentIdComparison; } }; public static final Comparator<DncLibrary> libraryRenderingOrder = new Comparator<DncLibrary>( ) { private final Char2IntMap typePriorities = new Char2IntOpenHashMap( ) {{ defaultReturnValue( -1 ); put( 'b', 0 ); put( 'B', 0 ); put( 'g', 1 ); put( 'G', 1 ); put( 'c', 2 ); put( 'C', 2 ); put( 'a', 3 ); put( 'A', 3 ); put( 'h', 4 ); put( 'H', 4 ); }}; public int compare( DncLibrary a, DncLibrary b ) { int aPriority = typePriorities.get( a.libraryName.charAt( 0 ) ); int bPriority = typePriorities.get( b.libraryName.charAt( 0 ) ); return compareInts( aPriority, bPriority ); } }; public static final Comparator<DncCoverage> coverageSignificanceComparator = new Comparator<DncCoverage>( ) { private final Object2IntMap<String> coverageRanks = new Object2IntOpenHashMap<String>( ) {{ put( "ecr", 1 ); put( "hyd", 2 ); defaultReturnValue( 3 ); }}; public int compare( DncCoverage a, DncCoverage b ) { int aRank = coverageRanks.getInt( a.coverageName ); int bRank = coverageRanks.getInt( b.coverageName ); return compareInts( aRank, bRank ); } }; }