/*
* This is eMonocot, a global online biodiversity information resource.
*
* Copyright © 2011–2015 The Board of Trustees of the Royal Botanic Gardens, Kew and The University of Oxford
*
* eMonocot is free software: you can redistribute it and/or modify it under the terms of the
* GNU Affero General Public License as published by the Free Software Foundation, either version 3
* of the License, or (at your option) any later version.
*
* eMonocot is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even
* the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Affero General Public License for more details.
*
* The complete text of the GNU Affero General Public License is in the source repository as the file
* ‘COPYING’. It is also available from <http://www.gnu.org/licenses/>.
*/
package org.emonocot.job.dwc.taxon;
import org.emonocot.api.TaxonService;
import org.emonocot.model.Taxon;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.batch.item.ItemProcessor;
public class CalculateDerivedPropertiesProcessor implements
ItemProcessor<Long, Taxon> {
private static Logger logger = LoggerFactory.getLogger(CalculateDerivedPropertiesProcessor.class);
private TaxonService taxonService;
public void setTaxonService(TaxonService taxonService) {
this.taxonService = taxonService;
}
@Override
public Taxon process(Long id) throws Exception {
Taxon taxon = taxonService.load(id, "taxon-page");
if(taxon.getTaxonRank() != null) {
switch (taxon.getTaxonRank()) {
case FAMILY:
if(taxon.getFamily() == null) {
taxon.setFamily(taxon.getScientificName());
}
break;
case ORDER:
if(taxon.getOrder() == null) {
taxon.setOrder(taxon.getScientificName());
}
break;
case Subfamily:
if(taxon.getSubfamily() == null) {
taxon.setSubfamily(taxon.getScientificName());
}
break;
case SUBGENUS:
if(taxon.getSubgenus() == null) {
taxon.setSubgenus(taxon.getScientificName());
}
break;
case Subtribe:
if(taxon.getSubtribe() == null) {
taxon.setSubtribe(taxon.getScientificName());
}
break;
case Tribe:
if(taxon.getTribe() == null) {
taxon.setTribe(taxon.getScientificName());
}
break;
default:
break;
}
}
for(Taxon higher : taxon.getHigherClassification()) {
if(higher.getTaxonRank() != null) {
switch (higher.getTaxonRank()) {
case FAMILY:
if(taxon.getFamily() == null) {
taxon.setFamily(higher.getScientificName());
}
break;
case ORDER:
if(taxon.getOrder() == null) {
taxon.setOrder(higher.getScientificName());
}
break;
case Subfamily:
if(taxon.getSubfamily() == null) {
taxon.setSubfamily(higher.getScientificName());
}
break;
case Subtribe:
if(taxon.getSubtribe() == null) {
taxon.setSubtribe(higher.getScientificName());
}
break;
case Tribe:
if(taxon.getTribe() == null) {
taxon.setTribe(higher.getScientificName());
}
break;
default:
break;
}
}
}
return taxon;
}
}