TwoPassDataIndexer.java

/*
 * Licensed to the Apache Software Foundation (ASF) under one
 * or more contributor license agreements.  See the NOTICE file
 * distributed with this work for additional information
 * regarding copyright ownership.  The ASF licenses this file
 * to you under the Apache License, Version 2.0 (the
 * "License"); you may not use this file except in compliance
 * with the License.  You may obtain a copy of the License at
 * 
 *   http://www.apache.org/licenses/LICENSE-2.0
 * 
 * Unless required by applicable law or agreed to in writing,
 * software distributed under the License is distributed on an
 * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
 * KIND, either express or implied.  See the License for the
 * specific language governing permissions and limitations
 * under the License.
 */

package opennlp.model;

import java.io.BufferedWriter;
import java.io.File;
import java.io.FileOutputStream;
import java.io.IOException;
import java.io.OutputStreamWriter;
import java.io.Writer;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Iterator;
import java.util.List;
import java.util.Map;
import java.util.Set;

import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;


/**
 * Collecting event and context counts by making two passes over the events.  The
 * first pass determines which contexts will be used by the model, and the
 * second pass creates the events in memory containing only the contexts which 
 * will be used.  This greatly reduces the amount of memory required for storing
 * the events.  During the first pass a temporary event file is created which
 * is read during the second pass.
 */
public class TwoPassDataIndexer extends AbstractDataIndexer{
  private static final Log LOG = LogFactory.getLog(TwoPassDataIndexer.class);

  /**
   * One argument constructor for DataIndexer which calls the two argument
   * constructor assuming no cutoff.
   *
   * @param eventStream An Event[] which contains the a list of all the Events
   *               seen in the training data.
   */
  public TwoPassDataIndexer(EventStream eventStream) throws IOException {
    this(eventStream, 0);
  }

  public TwoPassDataIndexer(EventStream eventStream, int cutoff) throws IOException {
    this(eventStream,cutoff,true);
  }
  /**
   * Two argument constructor for DataIndexer.
   *
   * @param eventStream An Event[] which contains the a list of all the Events
   *               seen in the training data.
   * @param cutoff The minimum number of times a predicate must have been
   *               observed in order to be included in the model.
   */
  public TwoPassDataIndexer(EventStream eventStream, int cutoff, boolean sort) throws IOException {
    Map<String,Integer> predicateIndex = new HashMap<String,Integer>();
    List eventsToCompare;

    LOG.info("Indexing events using cutoff of " + cutoff);

    LOG.info("Computing event counts...  ");
    try {
      File tmp = File.createTempFile("events", null);
      tmp.deleteOnExit();
      Writer osw = new BufferedWriter(new OutputStreamWriter(new FileOutputStream(tmp),"UTF8"));
      int numEvents = computeEventCounts(eventStream, osw, predicateIndex, cutoff);
      LOG.info("done. " + numEvents + " events");

      LOG.info("Indexing...  ");

      eventsToCompare = index(numEvents, this.getFileEventStream(tmp), predicateIndex);
      // done with predicates
      predicateIndex = null;
      tmp.delete();
      LOG.info("done.");

      if (sort) { 
        LOG.info("Sorting and merging events... ");
      }
      else {
        LOG.info("Collecting events... ");
      }
      sortAndMerge(eventsToCompare,sort);
      LOG.info("Done indexing.");
    }
    catch(IOException e) {
    	LOG.error(e);
    }
  }

  /**
      * Reads events from <tt>eventStream</tt> into a linked list.  The
      * predicates associated with each event are counted and any which
      * occur at least <tt>cutoff</tt> times are added to the
      * <tt>predicatesInOut</tt> map along with a unique integer index.
      *
      * @param eventStream an <code>EventStream</code> value
      * @param eventStore a writer to which the events are written to for later processing.
      * @param predicatesInOut a <code>TObjectIntHashMap</code> value
      * @param cutoff an <code>int</code> value
      */
  private int computeEventCounts(EventStream eventStream, Writer eventStore, Map<String,Integer> predicatesInOut, int cutoff) throws IOException {
    Map<String,Integer> counter = new HashMap<String,Integer>();
    int eventCount = 0;
    Set predicateSet = new HashSet();
    while (eventStream.hasNext()) {
      Event ev = eventStream.next();
      eventCount++;
      eventStore.write(this.toLine(ev));
      String[] ec = ev.getContext();
      update(ec,predicateSet,counter,cutoff);
    }
    predCounts = new int[predicateSet.size()];
    int index = 0;
    for (Iterator pi=predicateSet.iterator();pi.hasNext();index++) {
      String predicate = (String) pi.next();
      predCounts[index] = counter.get(predicate);
      predicatesInOut.put(predicate,index);
    }
    eventStore.close();
    return eventCount;
  }

  protected List index(int numEvents, EventStream es, Map<String,Integer> predicateIndex) throws IOException {
    Map<String,Integer> omap = new HashMap<String,Integer>();
    int outcomeCount = 0;
    List eventsToCompare = new ArrayList(numEvents);
    List<Integer> indexedContext = new ArrayList<Integer>();
    while (es.hasNext()) {
      Event ev = es.next();
      String[] econtext = ev.getContext();
      ComparableEvent ce;

      int ocID;
      String oc = ev.getOutcome();

      if (omap.containsKey(oc)) {
        ocID = omap.get(oc);
      }
      else {
        ocID = outcomeCount++;
        omap.put(oc, ocID);
      }

      for (int i = 0; i < econtext.length; i++) {
        String pred = econtext[i];
        if (predicateIndex.containsKey(pred)) {
          indexedContext.add(predicateIndex.get(pred));
        }
      }

      // drop events with no active features
      if (indexedContext.size() > 0) {
        int[] cons = new int[indexedContext.size()];
        for (int ci=0;ci<cons.length;ci++) {
          cons[ci] = indexedContext.get(ci);
        }
        ce = new ComparableEvent(ocID, cons);
        eventsToCompare.add(ce);
      }
      else {
        LOG.debug("Dropped event " + ev.getOutcome() + ":" + Arrays.asList(ev.getContext()));
      }
      // recycle the TIntArrayList
      indexedContext.clear();
    }
    outcomeLabels = toIndexedStringArray(omap);
    predLabels = toIndexedStringArray(predicateIndex);
    return eventsToCompare;
  }

  protected EventStream getFileEventStream(File file) throws IOException {
	  return new FileEventStream(file);
  }
  
  protected String toLine(Event ev) {
	  return FileEventStream.toLine(ev);
  }
}