/* Copyright (c) 2009 The Regents of the University of California. All rights reserved. Permission is hereby granted, without written agreement and without license or royalty fees, to use, copy, modify, and distribute this software and its documentation for any purpose, provided that the above copyright notice and the following two paragraphs appear in all copies of this software. IN NO EVENT SHALL THE UNIVERSITY OF CALIFORNIA BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OF THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF THE UNIVERSITY OF CALIFORNIA HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. THE UNIVERSITY OF CALIFORNIA SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE SOFTWARE PROVIDED HEREUNDER IS ON AN "AS IS" BASIS, AND THE UNIVERSITY OF CALIFORNIA HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS.. */ package org.clothocad.tool.bulltrowell.interpreters; import java.lang.reflect.InvocationTargetException; import java.util.ArrayList; import java.util.logging.Level; import java.util.logging.Logger; import javax.swing.SwingUtilities; import org.clothocore.api.core.Collector; import org.clothocore.api.data.Collection; import org.clothocore.api.data.Format; import org.clothocore.api.data.ObjLink; import org.clothocore.api.data.ObjType; import org.clothocore.api.data.Part; import org.clothocore.api.data.Person; import org.clothocore.api.data.Plasmid; import org.clothocore.api.data.Vector; import org.clothocad.tool.bulltrowell.view.hub; import org.clothocad.tool.bulltrowell.view.spreadsheet; /** * * @authorInputString J. Christopher Anderson */ public class addComposite implements interpreter { public addComposite() { String[] titles = { "(Vector Name)", "Part Name", "Lefty Part", "Righty Part", "(Format)", "(Author)", "(Description)" }; _numCols = titles.length; _numRows = hub.numrows; _data = new String[_numRows][_numCols]; for(int i=0; i<_numRows; i++) { for(int j=0; j< _numCols; j++) { _data[i][j] = ""; } } _mySheet = new spreadsheet(_data, titles, this); _mySheet.setTitle("Add Composite Parts"); _mySheet.setTitleArea("Add composite parts by Copy and Paste<br>You must supply Part Name, Lefty and Righty parts.<br>Other fields are optional. If a vector is added, a plasmid will also be generated."); if(Collector.isConnected()) { loadingthread = new Thread() { @Override public void run() { //Create a new Collection to store everything if(_outCollection==null) { _outCollection = new Collection(); SwingUtilities.invokeLater(new Runnable() { @Override public void run() { _outCollection.launchDefaultViewer(); } }); } //Get the current user final Person user = Collector.getCurrentUser(); //Put in the authorInputString chooser (field 2) _persons = Collector.getAllLinksOf(ObjType.PERSON); final Object[] authorChoices = _persons.toArray(); SwingUtilities.invokeLater(new Runnable() { @Override public void run() { _mySheet.putComboField2("Author", authorChoices, user.getName()); } }); //Put in the formatInputString chooser (field 3) _formats = Collector.getAllLinksOf(ObjType.FORMAT); final Object[] formatChoices = _formats.toArray(); try { SwingUtilities.invokeAndWait(new Runnable() { @Override public void run() { _mySheet.putComboField3("Formats", formatChoices, hub.getPreference("addPart_setFormat")); } }); } catch (InterruptedException ex) { Logger.getLogger(addPart.class.getName()).log(Level.SEVERE, null, ex); } catch (InvocationTargetException ex) { Logger.getLogger(addPart.class.getName()).log(Level.SEVERE, null, ex); } } }; loadingthread.start(); } } @Override public void receiveData(Object[][] data) { _data = (String[][]) data; for(int i=0; i<_data.length; i++) { for(int j=0; j<_data[0].length; j++) { System.out.print(_data[i][j] + ""); } System.out.println(""); } //If it's still loading wait for it to finish loading try { loadingthread.join(); } catch (InterruptedException ex) { } //Get the formatInputString and authorInputString defaults ObjLink link = (ObjLink) _mySheet.getComboField2(); _defaultAuthor = Collector.getPerson(link.uuid); link = (ObjLink) _mySheet.getComboField3(); _defaultFormat = Collector.getFormat(link.uuid); _data = (String[][]) data; for(int i=0; i<_data.length; i++) { try { //Retrieve the data in the current line String vectorname = _data[i][0]; String partname = _data[i][1]; String lefty = _data[i][2]; String righty = _data[i][3]; //If any of the 3 required fields weren't entered, abort this line if(righty.equals("") || lefty.equals("") || partname.equals("")) { continue; } else { System.out.println("Info is sufficient to add composite part"); } //Retrieve any additional lines entered String formatInputString = _data[i][4]; String authorInputString = _data[i][5]; String description = _data[i][6]; //If an authorInputString was typed in, search for that Person Person theauthor; if(authorInputString.equals("")) { theauthor = _defaultAuthor; } else { theauthor = Person.retrieveByName(authorInputString); if(theauthor==null) { System.out.println("person is null"); continue; } } //If an formatInputString was typed in, search for that Format Format theformat; if(formatInputString.equals("")) { theformat = _defaultFormat; } else { theformat = Format.retrieveByName(formatInputString); if(theformat==null) { System.out.println("format is null"); continue; } } //Get the parts Part leftypart = Part.retrieveByName(lefty); if(leftypart==null) { System.out.println("leftypart is null"); continue; } Part rightypart = Part.retrieveByName(righty); if(rightypart==null) { System.out.println("rightypart is null"); continue; } if(partname.length()<1) { System.out.println("no partname provided"); continue; } if(description.equals("")) { description = leftypart.getShortDescription() + "." +rightypart.getShortDescription(); } //Get the Vector, lefty, and righty parts Vector thevector = Vector.retrieveByName(vectorname); ArrayList<Part> composition = new ArrayList<Part>(); composition.add(leftypart); composition.add(rightypart); //Create the composite Part Part newcomposite = Part.generateComposite(composition, null, theformat, theauthor, partname, description); if(newcomposite==null) { continue; } _outCollection.addObject(newcomposite); //Notify user that the Part was created _mySheet.appendLogMessage(newcomposite.getName() + "\n"); System.out.println("I created composite part " + newcomposite.getName()); //Create the Plasmid if a Vector was entered if(thevector!=null) { Plasmid newplas = Plasmid.generatePlasmid( newcomposite, thevector, theauthor, theformat); if(newplas!=null) { _outCollection.addObject(newplas); //Notify user that the Part was created _mySheet.appendLogMessage(newplas.getName() + "\n"); System.out.println("I created plasmid " + newplas.getName()); } } //Clear the data in the data table for(int col=0; col<_numCols; col++) { _data[i][col] = ""; } } catch(java.lang.ClassCastException e) { continue; } } _mySheet.refreshData(_data); } /*----------------- variables -----------------*/ private String[][] _data; private spreadsheet _mySheet; private ArrayList<ObjLink> _persons; private ArrayList<ObjLink> _collections; private ArrayList<ObjLink> _formats; private Person _defaultAuthor; private Collection _outCollection; private Format _defaultFormat; private int _numCols; private int _numRows; private String messageText=""; private Thread loadingthread; }