/**
* Copyright (C) 2012-2013 Selventa, Inc.
*
* This file is part of the OpenBEL Framework.
*
* This program is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* The OpenBEL Framework is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
* or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
* License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>.
*
* Additional Terms under LGPL v3:
*
* This license does not authorize you and you are prohibited from using the
* name, trademarks, service marks, logos or similar indicia of Selventa, Inc.,
* or, in the discretion of other licensors or authors of the program, the
* name, trademarks, service marks, logos or similar indicia of such authors or
* licensors, in any marketing or advertising materials relating to your
* distribution of the program or any covered product. This restriction does
* not waive or limit your obligation to keep intact all copyright notices set
* forth in the program as delivered to you.
*
* If you distribute the program in whole or in part, or any modified version
* of the program, and you assume contractual liability to the recipient with
* respect to the program or modified version, then you will indemnify the
* authors and licensors of the program for any liabilities that these
* contractual assumptions directly impose on those licensors and authors.
*/
package org.openbel.framework.core.annotation;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.fail;
import java.net.URL;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
import org.openbel.framework.common.AnnotationDefinitionResolutionException;
import org.openbel.framework.common.SystemConfigurationFile;
import org.openbel.framework.common.cfg.SystemConfigurationBasedTest;
import org.openbel.framework.common.model.AnnotationDefinition;
import org.openbel.framework.core.annotation.AnnotationDefinitionService;
import org.openbel.framework.core.annotation.DefaultAnnotationDefinitionService;
import org.openbel.framework.core.df.cache.CacheLookupService;
import org.openbel.framework.core.df.cache.CacheableResourceService;
import org.openbel.framework.core.df.cache.DefaultCacheLookupService;
import org.openbel.framework.core.df.cache.DefaultCacheableResourceService;
/**
* DefaultAnnotationDefinitionServiceTest tests the
* {@link DefaultAnnotationDefinitionService}'s ability to resolve and
* parse .belanno files.
*
* @author Anthony Bargnesi {@code <abargnesi@selventa.com>}
*/
@SystemConfigurationFile(path = "src/test/resources/org/openbel/framework/core/namespace/belframework.cfg")
public class DefaultAnnotationDefinitionServiceTest extends
SystemConfigurationBasedTest {
private AnnotationDefinitionService annotationDefService;
@Before
@Override
public void setup() {
super.setup();
CacheableResourceService cacheService =
new DefaultCacheableResourceService();
CacheLookupService cacheLookup = new DefaultCacheLookupService();
annotationDefService = new DefaultAnnotationDefinitionService(
cacheService, cacheLookup);
}
@After
@Override
public void teardown() {
super.teardown();
}
@Test
public void testAnnotationResolution() {
URL belannoUrl = getClass().getResource(
"/org/openbel/framework/core/annotation/test.belanno");
try {
AnnotationDefinition anndef = annotationDefService
.resolveAnnotationDefinition(belannoUrl.toString());
assertNotNull(anndef);
assertNotNull(anndef.getEnums());
assertFalse(anndef.getEnums().isEmpty());
assertEquals("9606", anndef.getEnums().get(0));
assertEquals("10090", anndef.getEnums().get(1));
assertEquals("10116", anndef.getEnums().get(2));
} catch (AnnotationDefinitionResolutionException e) {
e.printStackTrace();
fail(e.getUserFacingMessage());
}
}
}