/**
* Copyright (C) 2012-2013 Selventa, Inc.
*
* This file is part of the OpenBEL Framework.
*
* This program is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* The OpenBEL Framework is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
* or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
* License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>.
*
* Additional Terms under LGPL v3:
*
* This license does not authorize you and you are prohibited from using the
* name, trademarks, service marks, logos or similar indicia of Selventa, Inc.,
* or, in the discretion of other licensors or authors of the program, the
* name, trademarks, service marks, logos or similar indicia of such authors or
* licensors, in any marketing or advertising materials relating to your
* distribution of the program or any covered product. This restriction does
* not waive or limit your obligation to keep intact all copyright notices set
* forth in the program as delivered to you.
*
* If you distribute the program in whole or in part, or any modified version
* of the program, and you assume contractual liability to the recipient with
* respect to the program or modified version, then you will indemnify the
* authors and licensors of the program for any liabilities that these
* contractual assumptions directly impose on those licensors and authors.
*/
package org.openbel.framework.api;
import java.util.Set;
import org.openbel.framework.api.Kam.KamNode;
import org.openbel.framework.api.internal.KAMCatalogDao.KamInfo;
import org.openbel.framework.common.enums.FunctionEnum;
import org.openbel.framework.common.enums.ReturnType;
/**
* Note: {@link NodeFilter}s are not currently designed to perform filtering on
* node labels. If such functionality is added, be sure to refactor
* {@link KamDialect} to support this.
*
* @author tchu
*/
public class NodeFilter extends Filter {
protected NodeFilter(KamInfo kamInfo) {
super(kamInfo);
}
/**
* Adds a new FunctionReturnFilterCriteria to the Filter
*
* @param criteria
* @return current {@link NodeFilter} for chaining
*/
public NodeFilter add(FunctionReturnFilterCriteria criteria) {
getFilterCriteria().add(criteria);
return this;
}
public NodeFilter add(FunctionTypeFilterCriteria criteria) {
getFilterCriteria().add(criteria);
return this;
}
public static NodeFilter createAbudancesFilter(Kam kam) {
return createFunctionReturnNodeFilter(kam, ReturnType.getAbundances());
}
public static NodeFilter createProcessesFilter(Kam kam) {
return createFunctionReturnNodeFilter(kam, ReturnType.getProcesses());
}
public static NodeFilter createAbundanceFunctionFilter(Kam kam) {
return createFunctionTypeNodeFilter(kam, FunctionEnum.getAbundances());
}
public static NodeFilter createActivityFunctionFilter(Kam kam) {
return createFunctionTypeNodeFilter(kam, FunctionEnum.getActivities());
}
public boolean accept(KamNode node) {
boolean ret = false;
// Need to test every criteria
for (FilterCriteria filterCriteria : getFilterCriteria()) {
boolean isInclude = filterCriteria.isInclude();
final boolean matches;
if (filterCriteria instanceof FunctionTypeFilterCriteria) {
matches =
matches(node,
(FunctionTypeFilterCriteria) filterCriteria);
} else {
matches =
matches(node,
(FunctionReturnFilterCriteria) filterCriteria);
}
if (matches) {
if (isInclude) {
// matches the included criteria, so it passes
return true;
}
// matches the excluded criteria, so it fails
return false;
} else if (!isInclude) {
// doesn't match the excluded criteria, so it passes
ret = true;
}
}
return ret;
}
private boolean
matches(KamNode node, FunctionReturnFilterCriteria criteria) {
for (ReturnType returnType : criteria.getValues()) {
// Check for a match
if (node.getFunctionType().getReturnType() == returnType) {
return true;
}
}
return false;
}
private boolean matches(final KamNode node,
FunctionTypeFilterCriteria criteria) {
for (FunctionEnum functionType : criteria.getValues()) {
// Check for a match
if (node.getFunctionType() == functionType) {
return true;
}
}
return false;
}
private static NodeFilter createFunctionReturnNodeFilter(Kam kam,
Set<ReturnType> returnTypes) {
FunctionReturnFilterCriteria filter =
new FunctionReturnFilterCriteria();
filter.setInclude(true);
filter.getValues().addAll(returnTypes);
NodeFilter nodeFilter = kam.createNodeFilter();
nodeFilter.add(filter);
return nodeFilter;
}
private static NodeFilter createFunctionTypeNodeFilter(final Kam kam,
Set<FunctionEnum> functionTypes) {
final FunctionTypeFilterCriteria criteria =
new FunctionTypeFilterCriteria();
criteria.setInclude(true);
criteria.getValues().addAll(functionTypes);
NodeFilter nodeFilter = kam.createNodeFilter();
nodeFilter.add(criteria);
return nodeFilter;
}
}