/**
* Copyright (C) 2012-2013 Selventa, Inc.
*
* This file is part of the OpenBEL Framework.
*
* This program is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* The OpenBEL Framework is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
* or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
* License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>.
*
* Additional Terms under LGPL v3:
*
* This license does not authorize you and you are prohibited from using the
* name, trademarks, service marks, logos or similar indicia of Selventa, Inc.,
* or, in the discretion of other licensors or authors of the program, the
* name, trademarks, service marks, logos or similar indicia of such authors or
* licensors, in any marketing or advertising materials relating to your
* distribution of the program or any covered product. This restriction does
* not waive or limit your obligation to keep intact all copyright notices set
* forth in the program as delivered to you.
*
* If you distribute the program in whole or in part, or any modified version
* of the program, and you assume contractual liability to the recipient with
* respect to the program or modified version, then you will indemnify the
* authors and licensors of the program for any liabilities that these
* contractual assumptions directly impose on those licensors and authors.
*/
package org.openbel.bel.xbel.model;
import javax.xml.bind.annotation.XmlEnum;
import javax.xml.bind.annotation.XmlEnumValue;
import javax.xml.bind.annotation.XmlType;
/**
* <p>Java class for function.
*
* <p>The following schema fragment specifies the expected content contained within this class.
* <p>
* <pre>
* <simpleType name="function">
* <restriction base="{http://www.w3.org/2001/XMLSchema}string">
* <enumeration value="proteinAbundance"/>
* <enumeration value="proteinModification"/>
* <enumeration value="substitution"/>
* <enumeration value="truncation"/>
* <enumeration value="rnaAbundance"/>
* <enumeration value="abundance"/>
* <enumeration value="microRNAAbundance"/>
* <enumeration value="geneAbundance"/>
* <enumeration value="biologicalProcess"/>
* <enumeration value="pathology"/>
* <enumeration value="complexAbundance"/>
* <enumeration value="translocation"/>
* <enumeration value="cellSecretion"/>
* <enumeration value="cellSurfaceExpression"/>
* <enumeration value="reaction"/>
* <enumeration value="compositeAbundance"/>
* <enumeration value="fusion"/>
* <enumeration value="reactants"/>
* <enumeration value="products"/>
* <enumeration value="degradation"/>
* <enumeration value="molecularActivity"/>
* <enumeration value="catalyticActivity"/>
* <enumeration value="kinaseActivity"/>
* <enumeration value="phosphataseActivity"/>
* <enumeration value="peptidaseActivity"/>
* <enumeration value="ribosylationActivity"/>
* <enumeration value="transcriptionalActivity"/>
* <enumeration value="transportActivity"/>
* <enumeration value="gtpBoundActivity"/>
* <enumeration value="chaperoneActivity"/>
* <enumeration value="list"/>
* </restriction>
* </simpleType>
* </pre>
*
*/
@XmlType(name = "function")
@XmlEnum
public enum Function {
/**
*
* The protein abundance BEL function.
*
*
*/
@XmlEnumValue("proteinAbundance")
PROTEIN_ABUNDANCE("proteinAbundance"),
/**
*
* The protein modification BEL function for a protein abundance.
*
*
*/
@XmlEnumValue("proteinModification")
PROTEIN_MODIFICATION("proteinModification"),
/**
*
* The substitution BEL function for a protein abundance.
*
*
*/
@XmlEnumValue("substitution")
SUBSTITUTION("substitution"),
/**
*
* The truncation BEL function for a protein abundance.
*
*
*/
@XmlEnumValue("truncation")
TRUNCATION("truncation"),
/**
*
* The rna abundance BEL function.
*
*
*/
@XmlEnumValue("rnaAbundance")
RNA_ABUNDANCE("rnaAbundance"),
/**
*
* The abundance BEL function.
*
*
*/
@XmlEnumValue("abundance")
ABUNDANCE("abundance"),
/**
*
* The micro rna abundance BEL function.
*
*
*/
@XmlEnumValue("microRNAAbundance")
MICRO_RNA_ABUNDANCE("microRNAAbundance"),
/**
*
* The gene abundance BEL function.
*
*
*/
@XmlEnumValue("geneAbundance")
GENE_ABUNDANCE("geneAbundance"),
/**
*
* The biological process BEL function.
*
*
*/
@XmlEnumValue("biologicalProcess")
BIOLOGICAL_PROCESS("biologicalProcess"),
/**
*
* The pathology BEL function.
*
*
*/
@XmlEnumValue("pathology")
PATHOLOGY("pathology"),
/**
*
* The complex abundance BEL function.
*
*
*/
@XmlEnumValue("complexAbundance")
COMPLEX_ABUNDANCE("complexAbundance"),
/**
*
* The translocation BEL function.
*
*
*/
@XmlEnumValue("translocation")
TRANSLOCATION("translocation"),
/**
*
* The cell secretion BEL function.
*
*
*/
@XmlEnumValue("cellSecretion")
CELL_SECRETION("cellSecretion"),
/**
*
* The cell surface expression BEL function.
*
*
*/
@XmlEnumValue("cellSurfaceExpression")
CELL_SURFACE_EXPRESSION("cellSurfaceExpression"),
/**
*
* The reaction BEL function.
*
*
*/
@XmlEnumValue("reaction")
REACTION("reaction"),
/**
*
* The composite abundance BEL function.
*
*
*/
@XmlEnumValue("compositeAbundance")
COMPOSITE_ABUNDANCE("compositeAbundance"),
/**
*
* The fusion BEL function.
*
*
*/
@XmlEnumValue("fusion")
FUSION("fusion"),
/**
*
* The reactants BEL function.
*
*
*/
@XmlEnumValue("reactants")
REACTANTS("reactants"),
/**
*
* The products BEL function.
*
*
*/
@XmlEnumValue("products")
PRODUCTS("products"),
/**
*
* The degradation BEL function.
*
*
*/
@XmlEnumValue("degradation")
DEGRADATION("degradation"),
/**
*
* The molecular activity BEL function.
*
*
*/
@XmlEnumValue("molecularActivity")
MOLECULAR_ACTIVITY("molecularActivity"),
/**
*
* The catalytic activity BEL function.
*
*
*/
@XmlEnumValue("catalyticActivity")
CATALYTIC_ACTIVITY("catalyticActivity"),
/**
*
* The kinase activity BEL function.
*
*
*/
@XmlEnumValue("kinaseActivity")
KINASE_ACTIVITY("kinaseActivity"),
/**
*
* The phosphatase activity BEL function.
*
*
*/
@XmlEnumValue("phosphataseActivity")
PHOSPHATASE_ACTIVITY("phosphataseActivity"),
/**
*
* The peptidase activity BEL function.
*
*
*/
@XmlEnumValue("peptidaseActivity")
PEPTIDASE_ACTIVITY("peptidaseActivity"),
/**
*
* The ribosylation activity BEL function.
*
*
*/
@XmlEnumValue("ribosylationActivity")
RIBOSYLATION_ACTIVITY("ribosylationActivity"),
/**
*
* The transcriptional activity BEL function.
*
*
*/
@XmlEnumValue("transcriptionalActivity")
TRANSCRIPTIONAL_ACTIVITY("transcriptionalActivity"),
/**
*
* The transport activity BEL function.
*
*
*/
@XmlEnumValue("transportActivity")
TRANSPORT_ACTIVITY("transportActivity"),
/**
*
* The gtp-bound activity BEL function.
*
*
*/
@XmlEnumValue("gtpBoundActivity")
GTP_BOUND_ACTIVITY("gtpBoundActivity"),
/**
*
* The chaperone activity BEL function.
*
*
*/
@XmlEnumValue("chaperoneActivity")
CHAPERONE_ACTIVITY("chaperoneActivity"),
/**
*
* The list BEL function.
*
*
*/
@XmlEnumValue("list")
LIST("list");
private final String value;
Function(String v) {
value = v;
}
public String value() {
return value;
}
public static Function fromValue(String v) {
for (Function c : Function.values()) {
if (c.value.equals(v)) {
return c;
}
}
throw new IllegalArgumentException(v);
}
}