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seqware-master
seqware-admin-webservice
src
main
java
io
seqware
webservice
adapter
DateFormatterAdapter.java
TimestampFormatterAdapter.java
package-info.java
client
SeqWareWebServiceClient.java
package-info.java
controller
CustomExpenseAttributeFacadeREST.java
CustomExpenseFacadeREST.java
CustomExperimentAttributeFacadeREST.java
CustomExperimentFacadeREST.java
CustomExperimentLibraryDesignFacadeREST.java
CustomExperimentLinkFacadeREST.java
CustomExperimentSpotDesignFacadeREST.java
CustomExperimentSpotDesignReadSpecFacadeREST.java
CustomFileAttributeFacadeREST.java
CustomFileFacadeREST.java
CustomFileReportFacadeREST.java
CustomFileTypeFacadeREST.java
CustomInvoiceAttributeFacadeREST.java
CustomInvoiceFacadeREST.java
CustomIusAttributeFacadeREST.java
CustomIusFacadeREST.java
CustomIusWorkflowRunsFacadeREST.java
CustomLaneAttributeFacadeREST.java
CustomLaneFacadeREST.java
CustomLaneTypeFacadeREST.java
CustomLaneWorkflowRunsFacadeREST.java
CustomLibrarySelectionFacadeREST.java
CustomLibrarySourceFacadeREST.java
CustomLibraryStrategyFacadeREST.java
CustomOrganismFacadeREST.java
CustomPlatformFacadeREST.java
CustomProcessingAttributeFacadeREST.java
CustomProcessingExperimentsFacadeREST.java
CustomProcessingFacadeREST.java
CustomProcessingFilesFacadeREST.java
CustomProcessingIusFacadeREST.java
CustomProcessingLanesFacadeREST.java
CustomProcessingRelationshipFacadeREST.java
CustomProcessingSamplesFacadeREST.java
CustomProcessingSequencerRunsFacadeREST.java
CustomProcessingStudiesFacadeREST.java
CustomRegistrationFacadeREST.java
CustomSampleAttributeFacadeREST.java
CustomSampleFacadeREST.java
CustomSampleRelationshipFacadeREST.java
CustomSampleReportFacadeREST.java
CustomSequencerRunAttributeFacadeREST.java
CustomSequencerRunFacadeREST.java
CustomShareStudyFacadeREST.java
CustomShareWorkflowRunFacadeREST.java
CustomStudyAttributeFacadeREST.java
CustomStudyFacadeREST.java
CustomStudyTypeFacadeREST.java
CustomWorkflowAttributeFacadeREST.java
CustomWorkflowFacadeREST.java
CustomWorkflowParamFacadeREST.java
CustomWorkflowParamValueFacadeREST.java
CustomWorkflowRunAttributeFacadeREST.java
CustomWorkflowRunFacadeREST.java
CustomWorkflowRunParamFacadeREST.java
ModelAccessionIDTuple.java
UtilityREST.java
package-info.java
generated
client
SeqWareWebserviceClient.java
package-info.java
controller
AbstractFacade.java
ExpenseAttributeFacadeREST.java
ExpenseFacadeREST.java
ExperimentAttributeFacadeREST.java
ExperimentFacadeREST.java
ExperimentLibraryDesignFacadeREST.java
ExperimentLinkFacadeREST.java
ExperimentSpotDesignFacadeREST.java
ExperimentSpotDesignReadSpecFacadeREST.java
FileAttributeFacadeREST.java
FileFacadeREST.java
FileReportFacadeREST.java
FileTypeFacadeREST.java
InvoiceAttributeFacadeREST.java
InvoiceFacadeREST.java
IusAttributeFacadeREST.java
IusFacadeREST.java
IusWorkflowRunsFacadeREST.java
LaneAttributeFacadeREST.java
LaneFacadeREST.java
LaneTypeFacadeREST.java
LaneWorkflowRunsFacadeREST.java
LibrarySelectionFacadeREST.java
LibrarySourceFacadeREST.java
LibraryStrategyFacadeREST.java
ModelAccessionIDTuple.java
OrganismFacadeREST.java
PlatformFacadeREST.java
ProcessingAttributeFacadeREST.java
ProcessingExperimentsFacadeREST.java
ProcessingFacadeREST.java
ProcessingFilesFacadeREST.java
ProcessingIusFacadeREST.java
ProcessingLanesFacadeREST.java
ProcessingRelationshipFacadeREST.java
ProcessingSamplesFacadeREST.java
ProcessingSequencerRunsFacadeREST.java
ProcessingStudiesFacadeREST.java
RegistrationFacadeREST.java
SampleAttributeFacadeREST.java
SampleFacadeREST.java
SampleRelationshipFacadeREST.java
SampleReportFacadeREST.java
SequencerRunAttributeFacadeREST.java
SequencerRunFacadeREST.java
ShareStudyFacadeREST.java
ShareWorkflowRunFacadeREST.java
StudyAttributeFacadeREST.java
StudyFacadeREST.java
StudyTypeFacadeREST.java
WorkflowAttributeFacadeREST.java
WorkflowFacadeREST.java
WorkflowParamFacadeREST.java
WorkflowParamValueFacadeREST.java
WorkflowRunAttributeFacadeREST.java
WorkflowRunFacadeREST.java
WorkflowRunParamFacadeREST.java
package-info.java
model
Expense.java
ExpenseAttribute.java
Experiment.java
ExperimentAttribute.java
ExperimentLibraryDesign.java
ExperimentLink.java
ExperimentSpotDesign.java
ExperimentSpotDesignReadSpec.java
File.java
FileAttribute.java
FileReport.java
FileType.java
Invoice.java
InvoiceAttribute.java
Ius.java
IusAttribute.java
IusWorkflowRuns.java
Lane.java
LaneAttribute.java
LaneType.java
LaneWorkflowRuns.java
LibrarySelection.java
LibrarySource.java
LibraryStrategy.java
Organism.java
Platform.java
Processing.java
ProcessingAttribute.java
ProcessingExperiments.java
ProcessingFiles.java
ProcessingIus.java
ProcessingLanes.java
ProcessingRelationship.java
ProcessingSamples.java
ProcessingSequencerRuns.java
ProcessingStudies.java
Registration.java
Sample.java
SampleAttribute.java
SampleRelationship.java
SampleReport.java
SequencerRun.java
SequencerRunAttribute.java
ShareStudy.java
ShareWorkflowRun.java
Study.java
StudyAttribute.java
StudyType.java
Workflow.java
WorkflowAttribute.java
WorkflowParam.java
WorkflowParamValue.java
WorkflowRun.java
WorkflowRunAttribute.java
WorkflowRunParam.java
package-info.java
seqware-archetypes
seqware-archetype-decider
src
main
resources
archetype-resources
src
main
java
__workflow-name__Decider.java
seqware-archetype-java-workflow
src
main
resources
archetype-resources
src
main
java
__workflow-name__Workflow.java
seqware-archetype-module
src
main
resources
archetype-resources
src
main
java
HelloWorldExample.java
seqware-common
src
main
java
io
seqware
Engines.java
package-info.java
pipeline
SqwKeys.java
package-info.java
net
sourceforge
seqware
common
ContextImpl.java
business
ExperimentLibraryDesignService.java
ExperimentService.java
ExperimentSpotDesignReadSpecService.java
ExperimentSpotDesignService.java
FileAttributeService.java
FileReportService.java
FileService.java
FileTypeService.java
FileUploadService.java
IUSService.java
InvoiceService.java
LaneService.java
LibrarySelectionService.java
LibraryService.java
LibrarySourceService.java
LibraryStrategyService.java
OrganismService.java
PlatformService.java
ProcessingExperimentsService.java
ProcessingIUSService.java
ProcessingLanesService.java
ProcessingRelationshipService.java
ProcessingSamplesService.java
ProcessingSequencerRunsService.java
ProcessingService.java
ProcessingStudiesService.java
RegistrationService.java
SampleReportService.java
SampleService.java
SequencerRunService.java
ShareStudyService.java
ShareWorkflowRunService.java
StudyService.java
StudyTypeService.java
UploadFile.java
ValidationReportService.java
WorkflowParamService.java
WorkflowParamValueService.java
WorkflowRunParamService.java
WorkflowRunService.java
WorkflowService.java
impl
ExperimentLibraryDesignServiceImpl.java
ExperimentServiceImpl.java
ExperimentSpotDesignReadSpecServiceImpl.java
ExperimentSpotDesignServiceImpl.java
FileAttributeServiceImpl.java
FileReportServiceImpl.java
FileServiceImpl.java
FileTypeServiceImpl.java
FileUploadServiceImpl.java
IUSServiceImpl.java
InvoiceServiceImpl.java
LaneServiceImpl.java
LibrarySelectionServiceImpl.java
LibraryServiceImpl.java
LibrarySourceServiceImpl.java
LibraryStrategyServiceImpl.java
OrganismServiceImpl.java
PlatformServiceImpl.java
ProcessingExperimentsServiceImpl.java
ProcessingIUSServiceImpl.java
ProcessingLanesServiceImpl.java
ProcessingRelationshipServiceImpl.java
ProcessingSamplesServiceImpl.java
ProcessingSequencerRunsServiceImpl.java
ProcessingServiceImpl.java
ProcessingStudiesServiceImpl.java
RegistrationServiceImpl.java
SampleReportServiceImpl.java
SampleServiceImpl.java
SequencerRunServiceImpl.java
ShareStudyServiceImpl.java
ShareWorkflowRunServiceImpl.java
StudyServiceImpl.java
StudyTypeServiceImpl.java
ValidationReportServiceImpl.java
WorkflowParamServiceImpl.java
WorkflowParamValueServiceImpl.java
WorkflowRunParamServiceImpl.java
WorkflowRunServiceImpl.java
WorkflowServiceImpl.java
package-info.java
package-info.java
dao
ExperimentAttributeDAO.java
ExperimentDAO.java
ExperimentLibraryDesignDAO.java
ExperimentSpotDesignDAO.java
ExperimentSpotDesignReadSpecDAO.java
FileAttributeDAO.java
FileDAO.java
FileReportDAO.java
FileTypeDAO.java
IUSAttributeDAO.java
IUSDAO.java
InvoiceDAO.java
LaneDAO.java
LibraryDAO.java
LibrarySelectionDAO.java
LibrarySourceDAO.java
LibraryStrategyDAO.java
OrganismDAO.java
PlatformDAO.java
ProcessingAttributeDAO.java
ProcessingDAO.java
ProcessingExperimentsDAO.java
ProcessingIUSDAO.java
ProcessingLanesDAO.java
ProcessingRelationshipDAO.java
ProcessingSamplesDAO.java
ProcessingSequencerRunsDAO.java
ProcessingStudiesDAO.java
RegistrationDAO.java
SampleAttributeDAO.java
SampleDAO.java
SampleReportDAO.java
SequencerRunDAO.java
ShareStudyDAO.java
ShareWorkflowRunDAO.java
StudyAttributeDAO.java
StudyDAO.java
StudyTypeDAO.java
WorkflowAttributeDAO.java
WorkflowDAO.java
WorkflowParamDAO.java
WorkflowParamValueDAO.java
WorkflowRunAttributeDAO.java
WorkflowRunDAO.java
WorkflowRunParamDAO.java
hibernate
ExperimentAttributeDAOHibernate.java
ExperimentDAOHibernate.java
ExperimentLibraryDesignDAOHibernate.java
ExperimentSpotDesignDAOHibernate.java
ExperimentSpotDesignReadSpecDAOHibernate.java
FileAttributeDAOHibernate.java
FileDAOHibernate.java
FileReportDAOHibernate.java
FileTypeDAOHibernate.java
IUSAttributeDAOHibernate.java
IUSDAOHibernate.java
InvoiceDAOHibernate.java
LaneAttributeDAO.java
LaneAttributeDAOHibernate.java
LaneDAOHibernate.java
LaneLinkDAO.java
LaneLinkDAOHibernate.java
LibraryDAOHibernate.java
LibrarySelectionDAOHibernate.java
LibrarySourceDAOHibernate.java
LibraryStrategyDAOHibernate.java
OrganismDAOHibernate.java
PlatformDAOHibernate.java
ProcessingAttributeDAOHibernate.java
ProcessingDAOHibernate.java
ProcessingExperimentsDAOHibernate.java
ProcessingIUSDAOHibernate.java
ProcessingLanesDAOHibernate.java
ProcessingRelationshipDAOHibernate.java
ProcessingSamplesDAOHibernate.java
ProcessingSequencerRunsDAOHibernate.java
ProcessingStudiesDAOHibernate.java
RegistrationDAOHibernate.java
SampleAttributeDAOHibernate.java
SampleDAOHibernate.java
SampleReportDAOHibernate.java
SequencerRunDAOHibernate.java
ShareStudyDAOHibernate.java
ShareWorkflowRunDAOHibernate.java
StudyAttributeDAOHibernate.java
StudyDAOHibernate.java
StudyTypeDAOHibernate.java
WorkflowAttributeDAOHibernate.java
WorkflowDAOHibernate.java
WorkflowParamDAOHibernate.java
WorkflowParamValueDAOHibernate.java
WorkflowRunAttributeDAOHibernate.java
WorkflowRunDAOHibernate.java
WorkflowRunParamDAOHibernate.java
package-info.java
package-info.java
err
NotFoundException.java
package-info.java
factory
BeanFactory.java
DBAccess.java
package-info.java
hibernate
CheckForCycles.java
FindAllTheFiles.java
InSessionExecutions.java
PropagateOwnership.java
WorkflowReport.java
WorkflowRunReport.java
package-info.java
reports
WorkflowRunReportRow.java
package-info.java
invitation
InvitationParams.java
RandomInvitationCode.java
package-info.java
metadata
Metadata.java
MetadataDB.java
MetadataFactory.java
MetadataInMemory.java
MetadataNoConnection.java
MetadataWS.java
package-info.java
model
Annotatable.java
Attribute.java
Expense.java
Experiment.java
ExperimentAttribute.java
ExperimentLibraryDesign.java
ExperimentSpotDesign.java
ExperimentSpotDesignReadSpec.java
File.java
FileAttribute.java
FileProvenanceParam.java
FileReportRow.java
FileType.java
FirstTierModel.java
IUS.java
IUSAttribute.java
Invoice.java
InvoiceState.java
Lane.java
LaneAttribute.java
LibrarySelection.java
LibrarySource.java
LibraryStrategy.java
Organism.java
ParentAccessionModel.java
Platform.java
Processing.java
ProcessingAttribute.java
ProcessingExperiments.java
ProcessingIus.java
ProcessingLanes.java
ProcessingRelationship.java
ProcessingSamples.java
ProcessingSequencerRuns.java
ProcessingStudies.java
Registration.java
RegistrationDTO.java
Sample.java
SampleAttribute.java
SampleReportRow.java
SecondTierModel.java
SequencerRun.java
SequencerRunAttribute.java
SequencerRunDTO.java
SequencerRunReportId.java
SequencerRunWizardDTO.java
ShareStudy.java
ShareWorkflowRun.java
Study.java
StudyAttribute.java
StudyType.java
UploadSequence.java
Workflow.java
WorkflowAttribute.java
WorkflowParam.java
WorkflowParamValue.java
WorkflowRun.java
WorkflowRunAttribute.java
WorkflowRunParam.java
adapters
XmlizeFileSet.java
XmlizeIUSSortedSet.java
XmlizeLaneSortedSet.java
XmlizeXML.java
package-info.java
comparator
ExperimentSpotDesignReadSpecComparator.java
package-info.java
lists
ExperimentLibraryDesignList.java
ExperimentList.java
ExperimentSpotDesignList.java
ExperimentSpotDesignReadSpecList.java
FileList.java
IUSList.java
IntegerList.java
LaneList.java
LibrarySelectionList.java
LibrarySourceList.java
LibraryStrategyList.java
OrganismList.java
PlatformList.java
ProcessingList.java
ReturnValueList.java
SampleList.java
SequencerRunList.java
StudyList.java
StudyTypeList.java
WorkflowList.java
WorkflowParamList.java
WorkflowParamValueList.java
WorkflowRunList.java
WorkflowRunList2.java
package-info.java
package-info.java
module
FileMetadata.java
ReturnValue.java
package-info.java
package-info.java
security
PermissionsAware.java
package-info.java
util
Bool.java
ExitException.java
Log.java
MD5Generator.java
NoExitSecurityManager.java
NullBeanUtils.java
Rethrow.java
Str.java
TabExpansionUtil.java
configtools
ConfigTools.java
package-info.java
exceptiontools
ExceptionTools.java
package-info.java
filetools
FileTools.java
ProvisionFilesUtil.java
lock
LockingFileTools.java
package-info.java
package-info.java
iotools
BufferedReaderThread.java
package-info.java
jsontools
JSONHelper.java
JsonUtil.java
package-info.java
maptools
MapTools.java
ReservedIniKeys.java
package-info.java
package-info.java
processtools
ProcessTools.java
package-info.java
runtools
ConsoleAdapter.java
RunTools.java
package-info.java
testtools
BasicTestDatabaseCreator.java
BasicTestDatabaseCreatorWrapper.java
JndiDatasourceCreator.java
package-info.java
workflowtools
WorkflowInfo.java
package-info.java
xmltools
JaxbObject.java
XmlTools.java
package-info.java
test
java
io
seqware
EnginesTest.java
net
sourceforge
seqware
common
BaseUnit.java
business
impl
ExperimentServiceImplTest.java
FileServiceImplTest.java
HibernateTestSuite.java
IusServiceImplTest.java
LaneServiceImplTest.java
ProcessingServiceImplTest.java
SampleReportServiceImplTest.java
SampleServiceImplTest.java
SequencerRunServiceImplTest.java
StudyServiceImplTest.java
WorkflowRunServiceImplTest.java
dao
FileAttributeDAOTest.java
WorkflowAttributeDAOTest.java
WorkflowRunAttributeDAOTest.java
hibernate
WorkflowReportTest.java
util
MD5GeneratorTest.java
configtools
ConfigToolsTest.java
filetools
FileToolsTest.java
jsontools
JSONHelperTest.java
maptools
MapToolsTest.java
xmltools
JaxbObjectTest.java
database
QueryTest.java
seqware-ext-admin-testing
src
main
java
net
sourceforge
seqware
pipeline
plugins
ExtendedTestDatabaseCreator.java
ITUtility.java
package-info.java
test
java
io
seqware
webservice
client
ConnectivityIT.java
net
sourceforge
seqware
pipeline
plugins
DeleteDBET.java
seqware-ext-testing
src
test
java
io
seqware
pipeline
Utility.java
whitestar
WhiteStarMetadataET.java
WhiteStarTest.java
net
sourceforge
seqware
pipeline
cli_tutorial
CLIAdminPhase1.java
CLIAdminTutorialSuiteET.java
CLIDeveloperPhase2.java
CLIDeveloperTutorialSuiteET.java
CLIUserPhase1.java
CLIUserPhase2.java
CLIUserPhase3.java
CLIUserPhase4.java
CLIUserPhase5.java
CLIUserPhase6.java
CLIUserTutorialSuiteET.java
debugging_tutorial
DebugWorkflowTutorialET.java
decider_tutorial
BasicDeciderTutorialET.java
modules
GenericCommandRunnerET.java
plugins
AttributeAnnotatorET.java
BasicDeciderET.java
BundleManagerET.java
CLI_ET.java
DatabaseCheckET.java
GenericMetadataSaverET.java
PluginRunnerET.java
ProcessingDataStructure2DotET.java
ProvisionFilesET.java
WorkflowLauncherET.java
WorkflowRunReporterET.java
regression_testing
OutofOrderWorkflowET.java
tutorial
AccessionMap.java
AdminPhase1.java
DeveloperPhase1.java
DeveloperPhase2.java
OldAdminTutorialSuiteET.java
OldDeveloperTutorialSuiteET.java
OldUserTutorialSuiteET.java
TutorialSuite.java
UserPhase1.java
UserPhase2.java
UserPhase3.java
UserPhase4.java
UserPhase5.java
UserPhase6.java
seqware-meta-db
src
main
java
io
seqware
common
model
ProcessingStatus.java
SequencerRunStatus.java
WorkflowRunStatus.java
package-info.java
metadb
util
TestDatabaseCreator.java
package-info.java
seqware-pipeline
src
main
java
io
seqware
Reports.java
Studies.java
WorkflowRuns.java
cli
Main.java
package-info.java
package-info.java
pipeline
api
Scheduler.java
WorkflowEngine.java
WorkflowTools.java
package-info.java
engines
package-info.java
whitestar
Persistence.java
WhiteStarWorkflowEngine.java
package-info.java
plugins
FileProvenanceQueryTool.java
UserSettingsPlugin.java
WorkflowLauncher.java
WorkflowLifecycle.java
WorkflowRelauncher.java
WorkflowRescheduler.java
WorkflowScheduler.java
WorkflowWatcher.java
package-info.java
net
sourceforge
seqware
pipeline
bundle
Bundle.java
BundleInfo.java
package-info.java
decider
DeciderInterface.java
package-info.java
deciders
BasicDecider.java
package-info.java
module
Module.java
ModuleInterface.java
ModuleMethod.java
RedirectAware.java
StderrRedirect.java
StdoutRedirect.java
TestModule.java
package-info.java
modules
GenericCommandRunner.java
GenericMetadataSaver.java
package-info.java
utilities
ProvisionDependenciesBundle.java
ProvisionFiles.java
S3CreateFileURLs.java
S3DeleteFiles.java
S3ListFiles.java
S3UploadDirectory.java
package-info.java
plugin
Plugin.java
PluginInterface.java
package-info.java
plugins
AttributeAnnotator.java
BatchMetadataInjection.java
BundleManager.java
CycleChecker.java
FileLinker.java
HelloWorld.java
MarkdownPlugin.java
Metadata.java
ModuleRunner.java
OozieXML2Dot.java
ProcessingDataStructure2Dot.java
WorkflowRunFilesInitialPopulationPlugin.java
WorkflowRunReporter.java
WorkflowStatusChecker.java
batchmetadatainjection
BatchMetadataParser.java
CreateFromScratch.java
LaneInfo.java
ParseMiseqFile.java
RunInfo.java
SampleInfo.java
TagValueUnit.java
package-info.java
checkdb
CheckDB.java
CheckDBPluginInterface.java
SelectQueryRunner.java
package-info.java
plugins
AttributePlugin.java
OrphanCheckerPlugin.java
SampleHierarchyPlugin.java
WorkflowRunConventionsPlugin.java
package-info.java
deletion
DeletionDB.java
package-info.java
filelinker
FileLinkerLine.java
FileLinkerLineException.java
FileLinkerParser.java
package-info.java
fileprovenance
FileProvenanceReporter.java
ProvenanceUtility.java
package-info.java
package-info.java
runner
PluginRunner.java
Runner.java
package-info.java
tools
RunLock.java
SetOperations.java
UnZip.java
Zip.java
package-info.java
workflowV2
AbstractWorkflowDataModel.java
WorkflowClassFinder.java
WorkflowDataModelFactory.java
WorkflowV2Utility.java
engine
oozie
OozieWorkflowEngine.java
OozieWorkflowXmlGenerator.java
object
BatchedOozieBashJob.java
BatchedOozieProvisionFileJob.java
OozieBashJob.java
OozieJob.java
OozieProvisionFileJob.java
StringTruncator.java
WorkflowApp.java
package-info.java
package-info.java
model
AbstractJob.java
Argument.java
BashJob.java
Command.java
Environment.java
JavaJob.java
JavaSeqwareModuleJob.java
Job.java
JobBatch.java
JobModule.java
JobProfile.java
Module.java
PerlJob.java
Requirement.java
SqwFile.java
Workflow.java
package-info.java
package-info.java
test
java
io
seqware
cli
test
WorkflowRunTest.java
pipeline
engines
whitestar
PersistenceTest.java
net
sourceforge
seqware
pipeline
CommandLineToolTest.java
LockfileTests.java
deciders
BasicDeciderConditionsTest.java
module
ModuleMethodTest.java
plugins
AttributeAnnotatorTest.java
DocumentationTest.java
WorkflowLauncherTest.java
WorkflowStatusCheckerTest.java
filelinker
FileLinkerParserTest.java
runner
RunnerTest.java
tools
SetOperationsTest.java
workflow
WorkflowTest.java
seqware-portal
src
main
java
net
sourceforge
solexatools
Debug.java
Security.java
authentication
Authentication.java
OICRLdapAuthentication.java
UNCKerberos.java
package-info.java
package-info.java
util
BulkUtil.java
Constant.java
ControllerUtil.java
FileFinder.java
FindChildUtil.java
FindRootUtil.java
HTMLTagValidator.java
LaunchWorkflowUtil.java
ModelUtil.java
NodeHtmlUtil.java
PageInfo.java
PaginationUtil.java
RandomInvitationCode.java
SequencerRunHtmlUtil.java
SetNodeIdInSession.java
StudyBuildTree.java
StudyHtmlUtil.java
SummaryData.java
SummaryLine.java
TagUtils.java
TreeNodeHtmlUtil.java
WorkflowRunHtmlUtil.java
ZipFileUtil.java
package-info.java
validation
CustomIntegerEditor.java
ExperimentUpdateValidator.java
ExperimentValidator.java
FileValidator.java
LaneValidator.java
LoginValidator.java
RegistrationValidator.java
SampleValidator.java
SequencerRunValidator.java
SequencerRunWizardValidator.java
StudyUpdateValidator.java
StudyValidator.java
UploadFileValidator.java
UploadSequenceValidator.java
WorkflowParamValidator.java
WorkflowValidator.java
package-info.java
webapp
controller
AbortLoadIndexPageController.java
AnalisysBulkDownloadListController.java
AnalisysBulkDownloadListDetailsController.java
AnalisysEventController.java
AnalisysListController.java
AnalisysListDetailsController.java
AnalisysRunningListDetailsController.java
AnalisysTableController.java
AnalisysTableControllerDetails.java
BulkDownloadListController.java
BulkDownloadListDetailsController.java
BulkDownloaderController.java
BulkDownloaderSizeValidatorController.java
CancelAnalysisWorkflowController.java
CancelBulkDownloaderController.java
CancelInputDownloaderController.java
ChangeNumberPopupPageController.java
ChangeWorkflowParamValueController.java
DeleteLoadedIndexPageController.java
DownloadFileListController.java
DownloaderController.java
EntityController.java
ExperimentController.java
ExperimentSetupController.java
FileController.java
FileSetupController.java
IUSController.java
IUSSetupController.java
InviteNewUserController.java
InviteNewUserSetupController.java
InviteNewUserValidatorController.java
InvoiceDetailsController.java
LaneController.java
LaneSampleAssociateController.java
LaneSampleAssociateSetupController.java
LaneSetupController.java
LaunchWorkflowController.java
LaunchWorkflowListController.java
LaunchWorkflowListDetailsController.java
LaunchWorkflowSetupController.java
LoadIndexPageController.java
LoginController.java
LogoutController.java
ManageWorkflowsController.java
OpenInvoiceController.java
ProcessingController.java
ProcessingSetupController.java
RegistrationController.java
RegistrationSetupController.java
RetryAnalysisWorkflowController.java
SampleController.java
SampleSetupController.java
SampleWorkflowRunsController.java
SaveOpenNodeController.java
SearchController.java
SearchResultsController.java
SearchResultsListController.java
SelectInputController.java
SelectInputListController.java
SequencerRunController.java
SequencerRunControllerDTO.java
SequencerRunListController.java
SequencerRunListDetailsController.java
SequencerRunReportSetupController.java
SequencerRunReportTableController.java
SequencerRunSetupController.java
SequencerRunSetupControllerDTO.java
SequencerRunWizardController.java
SequencerRunWizardSetupController.java
ShareValidatorController.java
SignUpController.java
StudyController.java
StudyListController.java
StudyListDetailsController.java
StudyListDetailsFlatController.java
StudyReportBoxController.java
StudyReportController.java
StudyReportSetupController.java
StudyReportTableController.java
StudySetupController.java
StudyTableController.java
StudyTableControllerDetails.java
SummaryLaunchWorkflowController.java
UploadFileController.java
UploadFileSetupController.java
UploadSequenceController.java
UploadSequenceSetupController.java
WorkflowController.java
WorkflowListSetupController.java
WorkflowParamController.java
WorkflowParamListController.java
WorkflowParamSetupController.java
WorkflowParamValueController.java
WorkflowParamValueSetupController.java
WorkflowRunController.java
WorkflowRunSetupController.java
WorkflowSetupController.java
package-info.java
metamodel
Flexigrid.java
SampleDetailsLineItem.java
SampleDetailsWorkflowLineItems.java
StudySampleReportFileLineItem.java
StudySampleReportLineItem.java
package-info.java
seqware-sanity-check
src
main
java
io
seqware
pipeline
plugins
sanity
ProvidedBundleCLIUserPhase5.java
ProvidedBundleUserPhase5.java
QueryRunner.java
SanityCheck.java
SanityCheckPluginInterface.java
checks
BundleDir_Check.java
CLICheck.java
ClientServerConsistencyCheck.java
DB_Check.java
DB_WS_ConsistencyCheck.java
HDFS_Check.java
Oozie_Check.java
Script_Check.java
TutorialCheck.java
WS_Check.java
package-info.java
package-info.java
seqware-webservice
src
main
java
net
sourceforge
seqware
queryengine
webservice
controller
SeqWareWebServiceApplication.java
package-info.java
model
SampleHierarchies.java
SampleHierarchy.java
package-info.java
security
SeqWareVerifier.java
package-info.java
webservice
resources
BasicResource.java
BasicRestlet.java
SeqwareAccessionIDResource.java
SeqwareAccessionResource.java
TomcatVersion.java
filters
ExperimentIDFilter.java
IUSIDFilter.java
LaneIDFilter.java
SampleIDFilter.java
package-info.java
package-info.java
queries
CycleCheckResource.java
EnvironmentResource.java
FileProvenanceResource.java
ProcessIdProcessResource.java
RunWorkflowResource.java
SampleHierarchyResource.java
TriggerFileProvenanceResource.java
WorkflowReportResource.java
WorkflowRunIDProcessingsResource.java
WorkflowRunIDWorkflowResource.java
WorkflowRunIdFilesResource.java
WorkflowRunReportResource.java
WorkflowRuntimeResource.java
package-info.java
tables
DatabaseIDResource.java
DatabaseResource.java
ExperimentIDResource.java
ExperimentLibraryDesignResource.java
ExperimentResource.java
ExperimentSpotDesignReadSpecResource.java
ExperimentSpotDesignResource.java
FileChildLimitedWorkflowRunsResource.java
FileChildWorkflowRunsResource.java
FileIDResource.java
FileLinkReportResource.java
FileResource.java
FileReverseHierarchyDisplayResource.java
IusIDResource.java
IusResource.java
LaneIDResource.java
LaneResource.java
LibrarySelectionResource.java
LibrarySourceResource.java
LibraryStrategyResource.java
OrganismResource.java
PlatformResource.java
ProcessIDResource.java
ProcessResource.java
ProcessingStructureResource.java
RootSampleResource.java
SampleIDResource.java
SampleResource.java
SequencerRunIDResource.java
SequencerRunResource.java
StudyIDResource.java
StudyResource.java
StudyTypeResource.java
WorkflowIDResource.java
WorkflowParamIDResource.java
WorkflowParamResource.java
WorkflowParamValueIDResource.java
WorkflowParamValueResource.java
WorkflowResource.java
WorkflowRunIDResource.java
WorkflowRunResource.java
package-info.java
test
java
io
seqware
pipeline
plugins
WorkflowSchedulerTest.java
net
sourceforge
seqware
common
metadata
MetadataDBTest.java
MetadataWSTest.java
util
runtools
TestConsoleAdapter.java
pipeline
deciders
BasicDeciderTest.java
plugins
BatchMetadataInjectionTest.java
ExtendedPluginTest.java
FileLinkerTest.java
FileProvenanceTest.java
GenericMetadataSaverTest.java
MetadataTest.java
PluginTest.java
webservice
resources
AbstractResourceTest.java
ClientResourceInstance.java
SeqwareAccessionIDResourceTest.java
SeqwareAccessionResourceTest.java
filters
ExperimentIDFilterTest.java
IUSIDFilterTest.java
LaneIDFilterTest.java
SampleIDFilterTest.java
WorkflowRunsFilterIDTest.java
WorkflowRunsFilterTest.java
WorkflowTestsFilterIDTest.java
WorkflowTestsFilterTest.java
queries
SequencerRunIdFilesResourceTest.java
tables
DatabaseResourceIDTest.java
DatabaseResourceTest.java
DummyExperimentIDResourceTest.java
ExperimentIDResourceTest.java
ExperimentLibraryDesignResourceTest.java
ExperimentResourceTest.java
ExperimentSpotDesignReadSpecResourceTest.java
ExperimentSpotDesignResourceTest.java
FileChildWorkflowRunsResourceTest.java
FileIDResourceTest.java
FileResourceTest.java
IusIDResourceTest.java
IusResourceTest.java
LaneIDResourceTest.java
LaneResourceTest.java
ProcessIDTest.java
ProcessResourceTest.java
RootSampleResourceTest.java
SampleIDResourceTest.java
SampleResourceTest.java
SequencerRunIDResourceTest.java
SequencerRunResourceTest.java
StudyIDResourceTest.java
StudyResourceTest.java
WSResourceTestSuite.java
WorkflowIDResourceTest.java
WorkflowResourceTest.java
WorkflowRunIDResourceTest.java
WorkflowRunResourceTest.java
/** * Unify status Strings across SeqWare. * * @since 1.0 */ package io.seqware.common.model;