package net.sourceforge.seqware.common.dao;
import java.util.List;
import java.util.SortedSet;
import net.sourceforge.seqware.common.model.File;
import net.sourceforge.seqware.common.model.Lane;
import net.sourceforge.seqware.common.model.Registration;
/**
* <p>
* LaneDAO interface.
* </p>
*
* @author boconnor
* @version $Id: $Id
*/
public interface LaneDAO {
/**
* <p>
* insert.
* </p>
*
* @param lane
* a {@link net.sourceforge.seqware.common.model.Lane} object.
* @return
*/
public Integer insert(Lane lane);
/**
* <p>
* insert.
* </p>
*
* @param registration
* a {@link net.sourceforge.seqware.common.model.Registration} object.
* @param lane
* a {@link net.sourceforge.seqware.common.model.Lane} object.
* @return
*/
public Integer insert(Registration registration, Lane lane);
/**
* <p>
* update.
* </p>
*
* @param lane
* a {@link net.sourceforge.seqware.common.model.Lane} object.
*/
public void update(Lane lane);
/**
* <p>
* update.
* </p>
*
* @param registration
* a {@link net.sourceforge.seqware.common.model.Registration} object.
* @param lane
* a {@link net.sourceforge.seqware.common.model.Lane} object.
*/
public void update(Registration registration, Lane lane);
/**
* <p>
* delete.
* </p>
*
* @param lane
* a {@link net.sourceforge.seqware.common.model.Lane} object.
*/
public void delete(Lane lane);
/**
* <p>
* delete.
* </p>
*
* @param lanes
* a {@link java.util.SortedSet} object.
*/
public void delete(SortedSet<Lane> lanes);
/**
* <p>
* findByName.
* </p>
*
* @param name
* a {@link java.lang.String} object.
* @return a {@link net.sourceforge.seqware.common.model.Lane} object.
*/
public Lane findByName(String name);
/**
* <p>
* findByID.
* </p>
*
* @param laneId
* a {@link java.lang.Integer} object.
* @return a {@link net.sourceforge.seqware.common.model.Lane} object.
*/
public Lane findByID(Integer laneId);
/**
* <p>
* getFiles.
* </p>
*
* @param laneId
* a {@link java.lang.Integer} object.
* @return a {@link java.util.List} object.
*/
public List<File> getFiles(Integer laneId);
/**
* <p>
* isHasFile.
* </p>
*
* @param laneId
* a {@link java.lang.Integer} object.
* @return a boolean.
*/
public boolean isHasFile(Integer laneId);
/**
* <p>
* getFiles.
* </p>
*
* @param studyId
* a {@link java.lang.Integer} object.
* @param metaType
* a {@link java.lang.String} object.
* @return a {@link java.util.List} object.
*/
public List<File> getFiles(Integer studyId, String metaType);
/**
* <p>
* isHasFile.
* </p>
*
* @param studyId
* a {@link java.lang.Integer} object.
* @param metaType
* a {@link java.lang.String} object.
* @return a boolean.
*/
public boolean isHasFile(Integer studyId, String metaType);
/**
* <p>
* list.
* </p>
*
* @param laneIds
* a {@link java.util.List} object.
* @return a {@link java.util.List} object.
*/
public List<Lane> list(List<Integer> laneIds);
/**
* <p>
* findBySWAccession.
* </p>
*
* @param swAccession
* a {@link java.lang.Integer} object.
* @return a {@link net.sourceforge.seqware.common.model.Lane} object.
*/
public Lane findBySWAccession(Integer swAccession);
/**
* <p>
* updateDetached.
* </p>
*
* @param lane
* a {@link net.sourceforge.seqware.common.model.Lane} object.
* @return a {@link net.sourceforge.seqware.common.model.Lane} object.
*/
public Lane updateDetached(Lane lane);
/**
* <p>
* updateDetached.
* </p>
*
* @param registration
* a {@link net.sourceforge.seqware.common.model.Registration} object.
* @param lane
* a {@link net.sourceforge.seqware.common.model.Lane} object.
* @return a {@link net.sourceforge.seqware.common.model.Lane} object.
*/
public Lane updateDetached(Registration registration, Lane lane);
/**
* <p>
* findByOwnerID.
* </p>
*
* @param registrationId
* a {@link java.lang.Integer} object.
* @return a {@link java.util.List} object.
*/
public List<Lane> findByOwnerID(Integer registrationId);
/**
* <p>
* findByCriteria.
* </p>
*
* @param criteria
* a {@link java.lang.String} object.
* @param isCaseSens
* a boolean.
* @return a {@link java.util.List} object.
*/
public List<Lane> findByCriteria(String criteria, boolean isCaseSens);
/**
* <p>
* list.
* </p>
*
* @return a {@link java.util.List} object.
*/
public List<Lane> list();
}