Sequence.java

/*
 * Genoogle: Similar DNA Sequences Searching Engine and Tools. (http://genoogle.pih.bio.br)
 * Copyright (C) 2008,2009, 2010, 2011, 2012  Felipe Fernandes Albrecht (felipe.albrecht@gmail.com)
 *
 * For further information check the LICENSE file.
 */

package bio.pih.genoogle.seq;

import java.io.Serializable;

public class Sequence extends LightweightSymbolList implements Serializable {
	
	private static final long serialVersionUID = -6728396309748182898L;
	
	private final String name;

	public Sequence(Sequence parent, int begin, int end) {
		super(parent, begin, end);
		this.name = parent.getName() + "_" + begin + "_" + end;
	}

	public Sequence(Alphabet alphabet, String seq, String name) throws IllegalSymbolException {
		super(alphabet, seq);
		this.name = name!=null?name:"";
	}

	public String getName() {
		return name;
	}
}