Io.java

// Generated by the protocol buffer compiler.  DO NOT EDIT!
// source: proto/io.proto

package bio.pih.genoogle.io.proto;

public final class Io {
  private Io() {}
  public static void registerAllExtensions(
      com.google.protobuf.ExtensionRegistry registry) {
  }
  public interface InvertedIndexBuckOrBuilder extends
      // @@protoc_insertion_point(interface_extends:proto.InvertedIndexBuck)
      com.google.protobuf.MessageOrBuilder {

    /**
     * <code>repeated int64 buck = 1;</code>
     */
    java.util.List<java.lang.Long> getBuckList();
    /**
     * <code>repeated int64 buck = 1;</code>
     */
    int getBuckCount();
    /**
     * <code>repeated int64 buck = 1;</code>
     */
    long getBuck(int index);
  }
  /**
   * Protobuf type {@code proto.InvertedIndexBuck}
   */
  public static final class InvertedIndexBuck extends
      com.google.protobuf.GeneratedMessage implements
      // @@protoc_insertion_point(message_implements:proto.InvertedIndexBuck)
      InvertedIndexBuckOrBuilder {
    // Use InvertedIndexBuck.newBuilder() to construct.
    private InvertedIndexBuck(com.google.protobuf.GeneratedMessage.Builder<?> builder) {
      super(builder);
      this.unknownFields = builder.getUnknownFields();
    }
    private InvertedIndexBuck(boolean noInit) { this.unknownFields = com.google.protobuf.UnknownFieldSet.getDefaultInstance(); }

    private static final InvertedIndexBuck defaultInstance;
    public static InvertedIndexBuck getDefaultInstance() {
      return defaultInstance;
    }

    public InvertedIndexBuck getDefaultInstanceForType() {
      return defaultInstance;
    }

    private final com.google.protobuf.UnknownFieldSet unknownFields;
    @java.lang.Override
    public final com.google.protobuf.UnknownFieldSet
        getUnknownFields() {
      return this.unknownFields;
    }
    private InvertedIndexBuck(
        com.google.protobuf.CodedInputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      initFields();
      int mutable_bitField0_ = 0;
      com.google.protobuf.UnknownFieldSet.Builder unknownFields =
          com.google.protobuf.UnknownFieldSet.newBuilder();
      try {
        boolean done = false;
        while (!done) {
          int tag = input.readTag();
          switch (tag) {
            case 0:
              done = true;
              break;
            default: {
              if (!parseUnknownField(input, unknownFields,
                                     extensionRegistry, tag)) {
                done = true;
              }
              break;
            }
            case 8: {
              if (!((mutable_bitField0_ & 0x00000001) == 0x00000001)) {
                buck_ = new java.util.ArrayList<java.lang.Long>();
                mutable_bitField0_ |= 0x00000001;
              }
              buck_.add(input.readInt64());
              break;
            }
            case 10: {
              int length = input.readRawVarint32();
              int limit = input.pushLimit(length);
              if (!((mutable_bitField0_ & 0x00000001) == 0x00000001) && input.getBytesUntilLimit() > 0) {
                buck_ = new java.util.ArrayList<java.lang.Long>();
                mutable_bitField0_ |= 0x00000001;
              }
              while (input.getBytesUntilLimit() > 0) {
                buck_.add(input.readInt64());
              }
              input.popLimit(limit);
              break;
            }
          }
        }
      } catch (com.google.protobuf.InvalidProtocolBufferException e) {
        throw e.setUnfinishedMessage(this);
      } catch (java.io.IOException e) {
        throw new com.google.protobuf.InvalidProtocolBufferException(
            e.getMessage()).setUnfinishedMessage(this);
      } finally {
        if (((mutable_bitField0_ & 0x00000001) == 0x00000001)) {
          buck_ = java.util.Collections.unmodifiableList(buck_);
        }
        this.unknownFields = unknownFields.build();
        makeExtensionsImmutable();
      }
    }
    public static final com.google.protobuf.Descriptors.Descriptor
        getDescriptor() {
      return bio.pih.genoogle.io.proto.Io.internal_static_proto_InvertedIndexBuck_descriptor;
    }

    protected com.google.protobuf.GeneratedMessage.FieldAccessorTable
        internalGetFieldAccessorTable() {
      return bio.pih.genoogle.io.proto.Io.internal_static_proto_InvertedIndexBuck_fieldAccessorTable
          .ensureFieldAccessorsInitialized(
              bio.pih.genoogle.io.proto.Io.InvertedIndexBuck.class, bio.pih.genoogle.io.proto.Io.InvertedIndexBuck.Builder.class);
    }

    public static com.google.protobuf.Parser<InvertedIndexBuck> PARSER =
        new com.google.protobuf.AbstractParser<InvertedIndexBuck>() {
      public InvertedIndexBuck parsePartialFrom(
          com.google.protobuf.CodedInputStream input,
          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
          throws com.google.protobuf.InvalidProtocolBufferException {
        return new InvertedIndexBuck(input, extensionRegistry);
      }
    };

    @java.lang.Override
    public com.google.protobuf.Parser<InvertedIndexBuck> getParserForType() {
      return PARSER;
    }

    public static final int BUCK_FIELD_NUMBER = 1;
    private java.util.List<java.lang.Long> buck_;
    /**
     * <code>repeated int64 buck = 1;</code>
     */
    public java.util.List<java.lang.Long>
        getBuckList() {
      return buck_;
    }
    /**
     * <code>repeated int64 buck = 1;</code>
     */
    public int getBuckCount() {
      return buck_.size();
    }
    /**
     * <code>repeated int64 buck = 1;</code>
     */
    public long getBuck(int index) {
      return buck_.get(index);
    }

    private void initFields() {
      buck_ = java.util.Collections.emptyList();
    }
    private byte memoizedIsInitialized = -1;
    public final boolean isInitialized() {
      byte isInitialized = memoizedIsInitialized;
      if (isInitialized == 1) return true;
      if (isInitialized == 0) return false;

      memoizedIsInitialized = 1;
      return true;
    }

    public void writeTo(com.google.protobuf.CodedOutputStream output)
                        throws java.io.IOException {
      getSerializedSize();
      for (int i = 0; i < buck_.size(); i++) {
        output.writeInt64(1, buck_.get(i));
      }
      getUnknownFields().writeTo(output);
    }

    private int memoizedSerializedSize = -1;
    public int getSerializedSize() {
      int size = memoizedSerializedSize;
      if (size != -1) return size;

      size = 0;
      {
        int dataSize = 0;
        for (int i = 0; i < buck_.size(); i++) {
          dataSize += com.google.protobuf.CodedOutputStream
            .computeInt64SizeNoTag(buck_.get(i));
        }
        size += dataSize;
        size += 1 * getBuckList().size();
      }
      size += getUnknownFields().getSerializedSize();
      memoizedSerializedSize = size;
      return size;
    }

    private static final long serialVersionUID = 0L;
    @java.lang.Override
    protected java.lang.Object writeReplace()
        throws java.io.ObjectStreamException {
      return super.writeReplace();
    }

    public static bio.pih.genoogle.io.proto.Io.InvertedIndexBuck parseFrom(
        com.google.protobuf.ByteString data)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data);
    }
    public static bio.pih.genoogle.io.proto.Io.InvertedIndexBuck parseFrom(
        com.google.protobuf.ByteString data,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.InvertedIndexBuck parseFrom(byte[] data)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data);
    }
    public static bio.pih.genoogle.io.proto.Io.InvertedIndexBuck parseFrom(
        byte[] data,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.InvertedIndexBuck parseFrom(java.io.InputStream input)
        throws java.io.IOException {
      return PARSER.parseFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.InvertedIndexBuck parseFrom(
        java.io.InputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseFrom(input, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.InvertedIndexBuck parseDelimitedFrom(java.io.InputStream input)
        throws java.io.IOException {
      return PARSER.parseDelimitedFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.InvertedIndexBuck parseDelimitedFrom(
        java.io.InputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseDelimitedFrom(input, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.InvertedIndexBuck parseFrom(
        com.google.protobuf.CodedInputStream input)
        throws java.io.IOException {
      return PARSER.parseFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.InvertedIndexBuck parseFrom(
        com.google.protobuf.CodedInputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseFrom(input, extensionRegistry);
    }

    public static Builder newBuilder() { return Builder.create(); }
    public Builder newBuilderForType() { return newBuilder(); }
    public static Builder newBuilder(bio.pih.genoogle.io.proto.Io.InvertedIndexBuck prototype) {
      return newBuilder().mergeFrom(prototype);
    }
    public Builder toBuilder() { return newBuilder(this); }

    @java.lang.Override
    protected Builder newBuilderForType(
        com.google.protobuf.GeneratedMessage.BuilderParent parent) {
      Builder builder = new Builder(parent);
      return builder;
    }
    /**
     * Protobuf type {@code proto.InvertedIndexBuck}
     */
    public static final class Builder extends
        com.google.protobuf.GeneratedMessage.Builder<Builder> implements
        // @@protoc_insertion_point(builder_implements:proto.InvertedIndexBuck)
        bio.pih.genoogle.io.proto.Io.InvertedIndexBuckOrBuilder {
      public static final com.google.protobuf.Descriptors.Descriptor
          getDescriptor() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_InvertedIndexBuck_descriptor;
      }

      protected com.google.protobuf.GeneratedMessage.FieldAccessorTable
          internalGetFieldAccessorTable() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_InvertedIndexBuck_fieldAccessorTable
            .ensureFieldAccessorsInitialized(
                bio.pih.genoogle.io.proto.Io.InvertedIndexBuck.class, bio.pih.genoogle.io.proto.Io.InvertedIndexBuck.Builder.class);
      }

      // Construct using bio.pih.genoogle.io.proto.Io.InvertedIndexBuck.newBuilder()
      private Builder() {
        maybeForceBuilderInitialization();
      }

      private Builder(
          com.google.protobuf.GeneratedMessage.BuilderParent parent) {
        super(parent);
        maybeForceBuilderInitialization();
      }
      private void maybeForceBuilderInitialization() {
        if (com.google.protobuf.GeneratedMessage.alwaysUseFieldBuilders) {
        }
      }
      private static Builder create() {
        return new Builder();
      }

      public Builder clear() {
        super.clear();
        buck_ = java.util.Collections.emptyList();
        bitField0_ = (bitField0_ & ~0x00000001);
        return this;
      }

      public Builder clone() {
        return create().mergeFrom(buildPartial());
      }

      public com.google.protobuf.Descriptors.Descriptor
          getDescriptorForType() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_InvertedIndexBuck_descriptor;
      }

      public bio.pih.genoogle.io.proto.Io.InvertedIndexBuck getDefaultInstanceForType() {
        return bio.pih.genoogle.io.proto.Io.InvertedIndexBuck.getDefaultInstance();
      }

      public bio.pih.genoogle.io.proto.Io.InvertedIndexBuck build() {
        bio.pih.genoogle.io.proto.Io.InvertedIndexBuck result = buildPartial();
        if (!result.isInitialized()) {
          throw newUninitializedMessageException(result);
        }
        return result;
      }

      public bio.pih.genoogle.io.proto.Io.InvertedIndexBuck buildPartial() {
        bio.pih.genoogle.io.proto.Io.InvertedIndexBuck result = new bio.pih.genoogle.io.proto.Io.InvertedIndexBuck(this);
        int from_bitField0_ = bitField0_;
        if (((bitField0_ & 0x00000001) == 0x00000001)) {
          buck_ = java.util.Collections.unmodifiableList(buck_);
          bitField0_ = (bitField0_ & ~0x00000001);
        }
        result.buck_ = buck_;
        onBuilt();
        return result;
      }

      public Builder mergeFrom(com.google.protobuf.Message other) {
        if (other instanceof bio.pih.genoogle.io.proto.Io.InvertedIndexBuck) {
          return mergeFrom((bio.pih.genoogle.io.proto.Io.InvertedIndexBuck)other);
        } else {
          super.mergeFrom(other);
          return this;
        }
      }

      public Builder mergeFrom(bio.pih.genoogle.io.proto.Io.InvertedIndexBuck other) {
        if (other == bio.pih.genoogle.io.proto.Io.InvertedIndexBuck.getDefaultInstance()) return this;
        if (!other.buck_.isEmpty()) {
          if (buck_.isEmpty()) {
            buck_ = other.buck_;
            bitField0_ = (bitField0_ & ~0x00000001);
          } else {
            ensureBuckIsMutable();
            buck_.addAll(other.buck_);
          }
          onChanged();
        }
        this.mergeUnknownFields(other.getUnknownFields());
        return this;
      }

      public final boolean isInitialized() {
        return true;
      }

      public Builder mergeFrom(
          com.google.protobuf.CodedInputStream input,
          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
          throws java.io.IOException {
        bio.pih.genoogle.io.proto.Io.InvertedIndexBuck parsedMessage = null;
        try {
          parsedMessage = PARSER.parsePartialFrom(input, extensionRegistry);
        } catch (com.google.protobuf.InvalidProtocolBufferException e) {
          parsedMessage = (bio.pih.genoogle.io.proto.Io.InvertedIndexBuck) e.getUnfinishedMessage();
          throw e;
        } finally {
          if (parsedMessage != null) {
            mergeFrom(parsedMessage);
          }
        }
        return this;
      }
      private int bitField0_;

      private java.util.List<java.lang.Long> buck_ = java.util.Collections.emptyList();
      private void ensureBuckIsMutable() {
        if (!((bitField0_ & 0x00000001) == 0x00000001)) {
          buck_ = new java.util.ArrayList<java.lang.Long>(buck_);
          bitField0_ |= 0x00000001;
         }
      }
      /**
       * <code>repeated int64 buck = 1;</code>
       */
      public java.util.List<java.lang.Long>
          getBuckList() {
        return java.util.Collections.unmodifiableList(buck_);
      }
      /**
       * <code>repeated int64 buck = 1;</code>
       */
      public int getBuckCount() {
        return buck_.size();
      }
      /**
       * <code>repeated int64 buck = 1;</code>
       */
      public long getBuck(int index) {
        return buck_.get(index);
      }
      /**
       * <code>repeated int64 buck = 1;</code>
       */
      public Builder setBuck(
          int index, long value) {
        ensureBuckIsMutable();
        buck_.set(index, value);
        onChanged();
        return this;
      }
      /**
       * <code>repeated int64 buck = 1;</code>
       */
      public Builder addBuck(long value) {
        ensureBuckIsMutable();
        buck_.add(value);
        onChanged();
        return this;
      }
      /**
       * <code>repeated int64 buck = 1;</code>
       */
      public Builder addAllBuck(
          java.lang.Iterable<? extends java.lang.Long> values) {
        ensureBuckIsMutable();
        com.google.protobuf.AbstractMessageLite.Builder.addAll(
            values, buck_);
        onChanged();
        return this;
      }
      /**
       * <code>repeated int64 buck = 1;</code>
       */
      public Builder clearBuck() {
        buck_ = java.util.Collections.emptyList();
        bitField0_ = (bitField0_ & ~0x00000001);
        onChanged();
        return this;
      }

      // @@protoc_insertion_point(builder_scope:proto.InvertedIndexBuck)
    }

    static {
      defaultInstance = new InvertedIndexBuck(true);
      defaultInstance.initFields();
    }

    // @@protoc_insertion_point(class_scope:proto.InvertedIndexBuck)
  }

  public interface StoredDatabankOrBuilder extends
      // @@protoc_insertion_point(interface_extends:proto.StoredDatabank)
      com.google.protobuf.MessageOrBuilder {

    /**
     * <code>required .proto.StoredDatabank.SequenceType type = 1;</code>
     */
    boolean hasType();
    /**
     * <code>required .proto.StoredDatabank.SequenceType type = 1;</code>
     */
    bio.pih.genoogle.io.proto.Io.StoredDatabank.SequenceType getType();

    /**
     * <code>required int32 subSequenceLength = 2;</code>
     */
    boolean hasSubSequenceLength();
    /**
     * <code>required int32 subSequenceLength = 2;</code>
     */
    int getSubSequenceLength();

    /**
     * <code>optional string mask = 3;</code>
     */
    boolean hasMask();
    /**
     * <code>optional string mask = 3;</code>
     */
    java.lang.String getMask();
    /**
     * <code>optional string mask = 3;</code>
     */
    com.google.protobuf.ByteString
        getMaskBytes();

    /**
     * <code>optional int32 lowComplexityFilter = 4;</code>
     */
    boolean hasLowComplexityFilter();
    /**
     * <code>optional int32 lowComplexityFilter = 4;</code>
     */
    int getLowComplexityFilter();

    /**
     * <code>required int32 qtdSequences = 5;</code>
     */
    boolean hasQtdSequences();
    /**
     * <code>required int32 qtdSequences = 5;</code>
     */
    int getQtdSequences();

    /**
     * <code>required int64 qtdBases = 6;</code>
     */
    boolean hasQtdBases();
    /**
     * <code>required int64 qtdBases = 6;</code>
     */
    long getQtdBases();

    /**
     * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
     */
    java.util.List<bio.pih.genoogle.io.proto.Io.StoredSequenceInfo> 
        getSequencesInfoList();
    /**
     * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
     */
    bio.pih.genoogle.io.proto.Io.StoredSequenceInfo getSequencesInfo(int index);
    /**
     * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
     */
    int getSequencesInfoCount();
    /**
     * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
     */
    java.util.List<? extends bio.pih.genoogle.io.proto.Io.StoredSequenceInfoOrBuilder> 
        getSequencesInfoOrBuilderList();
    /**
     * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
     */
    bio.pih.genoogle.io.proto.Io.StoredSequenceInfoOrBuilder getSequencesInfoOrBuilder(
        int index);
  }
  /**
   * Protobuf type {@code proto.StoredDatabank}
   */
  public static final class StoredDatabank extends
      com.google.protobuf.GeneratedMessage implements
      // @@protoc_insertion_point(message_implements:proto.StoredDatabank)
      StoredDatabankOrBuilder {
    // Use StoredDatabank.newBuilder() to construct.
    private StoredDatabank(com.google.protobuf.GeneratedMessage.Builder<?> builder) {
      super(builder);
      this.unknownFields = builder.getUnknownFields();
    }
    private StoredDatabank(boolean noInit) { this.unknownFields = com.google.protobuf.UnknownFieldSet.getDefaultInstance(); }

    private static final StoredDatabank defaultInstance;
    public static StoredDatabank getDefaultInstance() {
      return defaultInstance;
    }

    public StoredDatabank getDefaultInstanceForType() {
      return defaultInstance;
    }

    private final com.google.protobuf.UnknownFieldSet unknownFields;
    @java.lang.Override
    public final com.google.protobuf.UnknownFieldSet
        getUnknownFields() {
      return this.unknownFields;
    }
    private StoredDatabank(
        com.google.protobuf.CodedInputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      initFields();
      int mutable_bitField0_ = 0;
      com.google.protobuf.UnknownFieldSet.Builder unknownFields =
          com.google.protobuf.UnknownFieldSet.newBuilder();
      try {
        boolean done = false;
        while (!done) {
          int tag = input.readTag();
          switch (tag) {
            case 0:
              done = true;
              break;
            default: {
              if (!parseUnknownField(input, unknownFields,
                                     extensionRegistry, tag)) {
                done = true;
              }
              break;
            }
            case 8: {
              int rawValue = input.readEnum();
              bio.pih.genoogle.io.proto.Io.StoredDatabank.SequenceType value = bio.pih.genoogle.io.proto.Io.StoredDatabank.SequenceType.valueOf(rawValue);
              if (value == null) {
                unknownFields.mergeVarintField(1, rawValue);
              } else {
                bitField0_ |= 0x00000001;
                type_ = value;
              }
              break;
            }
            case 16: {
              bitField0_ |= 0x00000002;
              subSequenceLength_ = input.readInt32();
              break;
            }
            case 26: {
              com.google.protobuf.ByteString bs = input.readBytes();
              bitField0_ |= 0x00000004;
              mask_ = bs;
              break;
            }
            case 32: {
              bitField0_ |= 0x00000008;
              lowComplexityFilter_ = input.readInt32();
              break;
            }
            case 40: {
              bitField0_ |= 0x00000010;
              qtdSequences_ = input.readInt32();
              break;
            }
            case 48: {
              bitField0_ |= 0x00000020;
              qtdBases_ = input.readInt64();
              break;
            }
            case 58: {
              if (!((mutable_bitField0_ & 0x00000040) == 0x00000040)) {
                sequencesInfo_ = new java.util.ArrayList<bio.pih.genoogle.io.proto.Io.StoredSequenceInfo>();
                mutable_bitField0_ |= 0x00000040;
              }
              sequencesInfo_.add(input.readMessage(bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.PARSER, extensionRegistry));
              break;
            }
          }
        }
      } catch (com.google.protobuf.InvalidProtocolBufferException e) {
        throw e.setUnfinishedMessage(this);
      } catch (java.io.IOException e) {
        throw new com.google.protobuf.InvalidProtocolBufferException(
            e.getMessage()).setUnfinishedMessage(this);
      } finally {
        if (((mutable_bitField0_ & 0x00000040) == 0x00000040)) {
          sequencesInfo_ = java.util.Collections.unmodifiableList(sequencesInfo_);
        }
        this.unknownFields = unknownFields.build();
        makeExtensionsImmutable();
      }
    }
    public static final com.google.protobuf.Descriptors.Descriptor
        getDescriptor() {
      return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredDatabank_descriptor;
    }

    protected com.google.protobuf.GeneratedMessage.FieldAccessorTable
        internalGetFieldAccessorTable() {
      return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredDatabank_fieldAccessorTable
          .ensureFieldAccessorsInitialized(
              bio.pih.genoogle.io.proto.Io.StoredDatabank.class, bio.pih.genoogle.io.proto.Io.StoredDatabank.Builder.class);
    }

    public static com.google.protobuf.Parser<StoredDatabank> PARSER =
        new com.google.protobuf.AbstractParser<StoredDatabank>() {
      public StoredDatabank parsePartialFrom(
          com.google.protobuf.CodedInputStream input,
          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
          throws com.google.protobuf.InvalidProtocolBufferException {
        return new StoredDatabank(input, extensionRegistry);
      }
    };

    @java.lang.Override
    public com.google.protobuf.Parser<StoredDatabank> getParserForType() {
      return PARSER;
    }

    /**
     * Protobuf enum {@code proto.StoredDatabank.SequenceType}
     */
    public enum SequenceType
        implements com.google.protobuf.ProtocolMessageEnum {
      /**
       * <code>DNA = 0;</code>
       */
      DNA(0, 0),
      /**
       * <code>RNA = 1;</code>
       */
      RNA(1, 1),
      /**
       * <code>PROTEIN = 2;</code>
       */
      PROTEIN(2, 2),
      /**
       * <code>TRANSLATED_PROTEIN = 3;</code>
       */
      TRANSLATED_PROTEIN(3, 3),
      ;

      /**
       * <code>DNA = 0;</code>
       */
      public static final int DNA_VALUE = 0;
      /**
       * <code>RNA = 1;</code>
       */
      public static final int RNA_VALUE = 1;
      /**
       * <code>PROTEIN = 2;</code>
       */
      public static final int PROTEIN_VALUE = 2;
      /**
       * <code>TRANSLATED_PROTEIN = 3;</code>
       */
      public static final int TRANSLATED_PROTEIN_VALUE = 3;


      public final int getNumber() { return value; }

      public static SequenceType valueOf(int value) {
        switch (value) {
          case 0: return DNA;
          case 1: return RNA;
          case 2: return PROTEIN;
          case 3: return TRANSLATED_PROTEIN;
          default: return null;
        }
      }

      public static com.google.protobuf.Internal.EnumLiteMap<SequenceType>
          internalGetValueMap() {
        return internalValueMap;
      }
      private static com.google.protobuf.Internal.EnumLiteMap<SequenceType>
          internalValueMap =
            new com.google.protobuf.Internal.EnumLiteMap<SequenceType>() {
              public SequenceType findValueByNumber(int number) {
                return SequenceType.valueOf(number);
              }
            };

      public final com.google.protobuf.Descriptors.EnumValueDescriptor
          getValueDescriptor() {
        return getDescriptor().getValues().get(index);
      }
      public final com.google.protobuf.Descriptors.EnumDescriptor
          getDescriptorForType() {
        return getDescriptor();
      }
      public static final com.google.protobuf.Descriptors.EnumDescriptor
          getDescriptor() {
        return bio.pih.genoogle.io.proto.Io.StoredDatabank.getDescriptor().getEnumTypes().get(0);
      }

      private static final SequenceType[] VALUES = values();

      public static SequenceType valueOf(
          com.google.protobuf.Descriptors.EnumValueDescriptor desc) {
        if (desc.getType() != getDescriptor()) {
          throw new java.lang.IllegalArgumentException(
            "EnumValueDescriptor is not for this type.");
        }
        return VALUES[desc.getIndex()];
      }

      private final int index;
      private final int value;

      private SequenceType(int index, int value) {
        this.index = index;
        this.value = value;
      }

      // @@protoc_insertion_point(enum_scope:proto.StoredDatabank.SequenceType)
    }

    private int bitField0_;
    public static final int TYPE_FIELD_NUMBER = 1;
    private bio.pih.genoogle.io.proto.Io.StoredDatabank.SequenceType type_;
    /**
     * <code>required .proto.StoredDatabank.SequenceType type = 1;</code>
     */
    public boolean hasType() {
      return ((bitField0_ & 0x00000001) == 0x00000001);
    }
    /**
     * <code>required .proto.StoredDatabank.SequenceType type = 1;</code>
     */
    public bio.pih.genoogle.io.proto.Io.StoredDatabank.SequenceType getType() {
      return type_;
    }

    public static final int SUBSEQUENCELENGTH_FIELD_NUMBER = 2;
    private int subSequenceLength_;
    /**
     * <code>required int32 subSequenceLength = 2;</code>
     */
    public boolean hasSubSequenceLength() {
      return ((bitField0_ & 0x00000002) == 0x00000002);
    }
    /**
     * <code>required int32 subSequenceLength = 2;</code>
     */
    public int getSubSequenceLength() {
      return subSequenceLength_;
    }

    public static final int MASK_FIELD_NUMBER = 3;
    private java.lang.Object mask_;
    /**
     * <code>optional string mask = 3;</code>
     */
    public boolean hasMask() {
      return ((bitField0_ & 0x00000004) == 0x00000004);
    }
    /**
     * <code>optional string mask = 3;</code>
     */
    public java.lang.String getMask() {
      java.lang.Object ref = mask_;
      if (ref instanceof java.lang.String) {
        return (java.lang.String) ref;
      } else {
        com.google.protobuf.ByteString bs = 
            (com.google.protobuf.ByteString) ref;
        java.lang.String s = bs.toStringUtf8();
        if (bs.isValidUtf8()) {
          mask_ = s;
        }
        return s;
      }
    }
    /**
     * <code>optional string mask = 3;</code>
     */
    public com.google.protobuf.ByteString
        getMaskBytes() {
      java.lang.Object ref = mask_;
      if (ref instanceof java.lang.String) {
        com.google.protobuf.ByteString b = 
            com.google.protobuf.ByteString.copyFromUtf8(
                (java.lang.String) ref);
        mask_ = b;
        return b;
      } else {
        return (com.google.protobuf.ByteString) ref;
      }
    }

    public static final int LOWCOMPLEXITYFILTER_FIELD_NUMBER = 4;
    private int lowComplexityFilter_;
    /**
     * <code>optional int32 lowComplexityFilter = 4;</code>
     */
    public boolean hasLowComplexityFilter() {
      return ((bitField0_ & 0x00000008) == 0x00000008);
    }
    /**
     * <code>optional int32 lowComplexityFilter = 4;</code>
     */
    public int getLowComplexityFilter() {
      return lowComplexityFilter_;
    }

    public static final int QTDSEQUENCES_FIELD_NUMBER = 5;
    private int qtdSequences_;
    /**
     * <code>required int32 qtdSequences = 5;</code>
     */
    public boolean hasQtdSequences() {
      return ((bitField0_ & 0x00000010) == 0x00000010);
    }
    /**
     * <code>required int32 qtdSequences = 5;</code>
     */
    public int getQtdSequences() {
      return qtdSequences_;
    }

    public static final int QTDBASES_FIELD_NUMBER = 6;
    private long qtdBases_;
    /**
     * <code>required int64 qtdBases = 6;</code>
     */
    public boolean hasQtdBases() {
      return ((bitField0_ & 0x00000020) == 0x00000020);
    }
    /**
     * <code>required int64 qtdBases = 6;</code>
     */
    public long getQtdBases() {
      return qtdBases_;
    }

    public static final int SEQUENCESINFO_FIELD_NUMBER = 7;
    private java.util.List<bio.pih.genoogle.io.proto.Io.StoredSequenceInfo> sequencesInfo_;
    /**
     * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
     */
    public java.util.List<bio.pih.genoogle.io.proto.Io.StoredSequenceInfo> getSequencesInfoList() {
      return sequencesInfo_;
    }
    /**
     * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
     */
    public java.util.List<? extends bio.pih.genoogle.io.proto.Io.StoredSequenceInfoOrBuilder> 
        getSequencesInfoOrBuilderList() {
      return sequencesInfo_;
    }
    /**
     * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
     */
    public int getSequencesInfoCount() {
      return sequencesInfo_.size();
    }
    /**
     * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
     */
    public bio.pih.genoogle.io.proto.Io.StoredSequenceInfo getSequencesInfo(int index) {
      return sequencesInfo_.get(index);
    }
    /**
     * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
     */
    public bio.pih.genoogle.io.proto.Io.StoredSequenceInfoOrBuilder getSequencesInfoOrBuilder(
        int index) {
      return sequencesInfo_.get(index);
    }

    private void initFields() {
      type_ = bio.pih.genoogle.io.proto.Io.StoredDatabank.SequenceType.DNA;
      subSequenceLength_ = 0;
      mask_ = "";
      lowComplexityFilter_ = 0;
      qtdSequences_ = 0;
      qtdBases_ = 0L;
      sequencesInfo_ = java.util.Collections.emptyList();
    }
    private byte memoizedIsInitialized = -1;
    public final boolean isInitialized() {
      byte isInitialized = memoizedIsInitialized;
      if (isInitialized == 1) return true;
      if (isInitialized == 0) return false;

      if (!hasType()) {
        memoizedIsInitialized = 0;
        return false;
      }
      if (!hasSubSequenceLength()) {
        memoizedIsInitialized = 0;
        return false;
      }
      if (!hasQtdSequences()) {
        memoizedIsInitialized = 0;
        return false;
      }
      if (!hasQtdBases()) {
        memoizedIsInitialized = 0;
        return false;
      }
      for (int i = 0; i < getSequencesInfoCount(); i++) {
        if (!getSequencesInfo(i).isInitialized()) {
          memoizedIsInitialized = 0;
          return false;
        }
      }
      memoizedIsInitialized = 1;
      return true;
    }

    public void writeTo(com.google.protobuf.CodedOutputStream output)
                        throws java.io.IOException {
      getSerializedSize();
      if (((bitField0_ & 0x00000001) == 0x00000001)) {
        output.writeEnum(1, type_.getNumber());
      }
      if (((bitField0_ & 0x00000002) == 0x00000002)) {
        output.writeInt32(2, subSequenceLength_);
      }
      if (((bitField0_ & 0x00000004) == 0x00000004)) {
        output.writeBytes(3, getMaskBytes());
      }
      if (((bitField0_ & 0x00000008) == 0x00000008)) {
        output.writeInt32(4, lowComplexityFilter_);
      }
      if (((bitField0_ & 0x00000010) == 0x00000010)) {
        output.writeInt32(5, qtdSequences_);
      }
      if (((bitField0_ & 0x00000020) == 0x00000020)) {
        output.writeInt64(6, qtdBases_);
      }
      for (int i = 0; i < sequencesInfo_.size(); i++) {
        output.writeMessage(7, sequencesInfo_.get(i));
      }
      getUnknownFields().writeTo(output);
    }

    private int memoizedSerializedSize = -1;
    public int getSerializedSize() {
      int size = memoizedSerializedSize;
      if (size != -1) return size;

      size = 0;
      if (((bitField0_ & 0x00000001) == 0x00000001)) {
        size += com.google.protobuf.CodedOutputStream
          .computeEnumSize(1, type_.getNumber());
      }
      if (((bitField0_ & 0x00000002) == 0x00000002)) {
        size += com.google.protobuf.CodedOutputStream
          .computeInt32Size(2, subSequenceLength_);
      }
      if (((bitField0_ & 0x00000004) == 0x00000004)) {
        size += com.google.protobuf.CodedOutputStream
          .computeBytesSize(3, getMaskBytes());
      }
      if (((bitField0_ & 0x00000008) == 0x00000008)) {
        size += com.google.protobuf.CodedOutputStream
          .computeInt32Size(4, lowComplexityFilter_);
      }
      if (((bitField0_ & 0x00000010) == 0x00000010)) {
        size += com.google.protobuf.CodedOutputStream
          .computeInt32Size(5, qtdSequences_);
      }
      if (((bitField0_ & 0x00000020) == 0x00000020)) {
        size += com.google.protobuf.CodedOutputStream
          .computeInt64Size(6, qtdBases_);
      }
      for (int i = 0; i < sequencesInfo_.size(); i++) {
        size += com.google.protobuf.CodedOutputStream
          .computeMessageSize(7, sequencesInfo_.get(i));
      }
      size += getUnknownFields().getSerializedSize();
      memoizedSerializedSize = size;
      return size;
    }

    private static final long serialVersionUID = 0L;
    @java.lang.Override
    protected java.lang.Object writeReplace()
        throws java.io.ObjectStreamException {
      return super.writeReplace();
    }

    public static bio.pih.genoogle.io.proto.Io.StoredDatabank parseFrom(
        com.google.protobuf.ByteString data)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredDatabank parseFrom(
        com.google.protobuf.ByteString data,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredDatabank parseFrom(byte[] data)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredDatabank parseFrom(
        byte[] data,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredDatabank parseFrom(java.io.InputStream input)
        throws java.io.IOException {
      return PARSER.parseFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredDatabank parseFrom(
        java.io.InputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseFrom(input, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredDatabank parseDelimitedFrom(java.io.InputStream input)
        throws java.io.IOException {
      return PARSER.parseDelimitedFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredDatabank parseDelimitedFrom(
        java.io.InputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseDelimitedFrom(input, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredDatabank parseFrom(
        com.google.protobuf.CodedInputStream input)
        throws java.io.IOException {
      return PARSER.parseFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredDatabank parseFrom(
        com.google.protobuf.CodedInputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseFrom(input, extensionRegistry);
    }

    public static Builder newBuilder() { return Builder.create(); }
    public Builder newBuilderForType() { return newBuilder(); }
    public static Builder newBuilder(bio.pih.genoogle.io.proto.Io.StoredDatabank prototype) {
      return newBuilder().mergeFrom(prototype);
    }
    public Builder toBuilder() { return newBuilder(this); }

    @java.lang.Override
    protected Builder newBuilderForType(
        com.google.protobuf.GeneratedMessage.BuilderParent parent) {
      Builder builder = new Builder(parent);
      return builder;
    }
    /**
     * Protobuf type {@code proto.StoredDatabank}
     */
    public static final class Builder extends
        com.google.protobuf.GeneratedMessage.Builder<Builder> implements
        // @@protoc_insertion_point(builder_implements:proto.StoredDatabank)
        bio.pih.genoogle.io.proto.Io.StoredDatabankOrBuilder {
      public static final com.google.protobuf.Descriptors.Descriptor
          getDescriptor() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredDatabank_descriptor;
      }

      protected com.google.protobuf.GeneratedMessage.FieldAccessorTable
          internalGetFieldAccessorTable() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredDatabank_fieldAccessorTable
            .ensureFieldAccessorsInitialized(
                bio.pih.genoogle.io.proto.Io.StoredDatabank.class, bio.pih.genoogle.io.proto.Io.StoredDatabank.Builder.class);
      }

      // Construct using bio.pih.genoogle.io.proto.Io.StoredDatabank.newBuilder()
      private Builder() {
        maybeForceBuilderInitialization();
      }

      private Builder(
          com.google.protobuf.GeneratedMessage.BuilderParent parent) {
        super(parent);
        maybeForceBuilderInitialization();
      }
      private void maybeForceBuilderInitialization() {
        if (com.google.protobuf.GeneratedMessage.alwaysUseFieldBuilders) {
          getSequencesInfoFieldBuilder();
        }
      }
      private static Builder create() {
        return new Builder();
      }

      public Builder clear() {
        super.clear();
        type_ = bio.pih.genoogle.io.proto.Io.StoredDatabank.SequenceType.DNA;
        bitField0_ = (bitField0_ & ~0x00000001);
        subSequenceLength_ = 0;
        bitField0_ = (bitField0_ & ~0x00000002);
        mask_ = "";
        bitField0_ = (bitField0_ & ~0x00000004);
        lowComplexityFilter_ = 0;
        bitField0_ = (bitField0_ & ~0x00000008);
        qtdSequences_ = 0;
        bitField0_ = (bitField0_ & ~0x00000010);
        qtdBases_ = 0L;
        bitField0_ = (bitField0_ & ~0x00000020);
        if (sequencesInfoBuilder_ == null) {
          sequencesInfo_ = java.util.Collections.emptyList();
          bitField0_ = (bitField0_ & ~0x00000040);
        } else {
          sequencesInfoBuilder_.clear();
        }
        return this;
      }

      public Builder clone() {
        return create().mergeFrom(buildPartial());
      }

      public com.google.protobuf.Descriptors.Descriptor
          getDescriptorForType() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredDatabank_descriptor;
      }

      public bio.pih.genoogle.io.proto.Io.StoredDatabank getDefaultInstanceForType() {
        return bio.pih.genoogle.io.proto.Io.StoredDatabank.getDefaultInstance();
      }

      public bio.pih.genoogle.io.proto.Io.StoredDatabank build() {
        bio.pih.genoogle.io.proto.Io.StoredDatabank result = buildPartial();
        if (!result.isInitialized()) {
          throw newUninitializedMessageException(result);
        }
        return result;
      }

      public bio.pih.genoogle.io.proto.Io.StoredDatabank buildPartial() {
        bio.pih.genoogle.io.proto.Io.StoredDatabank result = new bio.pih.genoogle.io.proto.Io.StoredDatabank(this);
        int from_bitField0_ = bitField0_;
        int to_bitField0_ = 0;
        if (((from_bitField0_ & 0x00000001) == 0x00000001)) {
          to_bitField0_ |= 0x00000001;
        }
        result.type_ = type_;
        if (((from_bitField0_ & 0x00000002) == 0x00000002)) {
          to_bitField0_ |= 0x00000002;
        }
        result.subSequenceLength_ = subSequenceLength_;
        if (((from_bitField0_ & 0x00000004) == 0x00000004)) {
          to_bitField0_ |= 0x00000004;
        }
        result.mask_ = mask_;
        if (((from_bitField0_ & 0x00000008) == 0x00000008)) {
          to_bitField0_ |= 0x00000008;
        }
        result.lowComplexityFilter_ = lowComplexityFilter_;
        if (((from_bitField0_ & 0x00000010) == 0x00000010)) {
          to_bitField0_ |= 0x00000010;
        }
        result.qtdSequences_ = qtdSequences_;
        if (((from_bitField0_ & 0x00000020) == 0x00000020)) {
          to_bitField0_ |= 0x00000020;
        }
        result.qtdBases_ = qtdBases_;
        if (sequencesInfoBuilder_ == null) {
          if (((bitField0_ & 0x00000040) == 0x00000040)) {
            sequencesInfo_ = java.util.Collections.unmodifiableList(sequencesInfo_);
            bitField0_ = (bitField0_ & ~0x00000040);
          }
          result.sequencesInfo_ = sequencesInfo_;
        } else {
          result.sequencesInfo_ = sequencesInfoBuilder_.build();
        }
        result.bitField0_ = to_bitField0_;
        onBuilt();
        return result;
      }

      public Builder mergeFrom(com.google.protobuf.Message other) {
        if (other instanceof bio.pih.genoogle.io.proto.Io.StoredDatabank) {
          return mergeFrom((bio.pih.genoogle.io.proto.Io.StoredDatabank)other);
        } else {
          super.mergeFrom(other);
          return this;
        }
      }

      public Builder mergeFrom(bio.pih.genoogle.io.proto.Io.StoredDatabank other) {
        if (other == bio.pih.genoogle.io.proto.Io.StoredDatabank.getDefaultInstance()) return this;
        if (other.hasType()) {
          setType(other.getType());
        }
        if (other.hasSubSequenceLength()) {
          setSubSequenceLength(other.getSubSequenceLength());
        }
        if (other.hasMask()) {
          bitField0_ |= 0x00000004;
          mask_ = other.mask_;
          onChanged();
        }
        if (other.hasLowComplexityFilter()) {
          setLowComplexityFilter(other.getLowComplexityFilter());
        }
        if (other.hasQtdSequences()) {
          setQtdSequences(other.getQtdSequences());
        }
        if (other.hasQtdBases()) {
          setQtdBases(other.getQtdBases());
        }
        if (sequencesInfoBuilder_ == null) {
          if (!other.sequencesInfo_.isEmpty()) {
            if (sequencesInfo_.isEmpty()) {
              sequencesInfo_ = other.sequencesInfo_;
              bitField0_ = (bitField0_ & ~0x00000040);
            } else {
              ensureSequencesInfoIsMutable();
              sequencesInfo_.addAll(other.sequencesInfo_);
            }
            onChanged();
          }
        } else {
          if (!other.sequencesInfo_.isEmpty()) {
            if (sequencesInfoBuilder_.isEmpty()) {
              sequencesInfoBuilder_.dispose();
              sequencesInfoBuilder_ = null;
              sequencesInfo_ = other.sequencesInfo_;
              bitField0_ = (bitField0_ & ~0x00000040);
              sequencesInfoBuilder_ = 
                com.google.protobuf.GeneratedMessage.alwaysUseFieldBuilders ?
                   getSequencesInfoFieldBuilder() : null;
            } else {
              sequencesInfoBuilder_.addAllMessages(other.sequencesInfo_);
            }
          }
        }
        this.mergeUnknownFields(other.getUnknownFields());
        return this;
      }

      public final boolean isInitialized() {
        if (!hasType()) {
          
          return false;
        }
        if (!hasSubSequenceLength()) {
          
          return false;
        }
        if (!hasQtdSequences()) {
          
          return false;
        }
        if (!hasQtdBases()) {
          
          return false;
        }
        for (int i = 0; i < getSequencesInfoCount(); i++) {
          if (!getSequencesInfo(i).isInitialized()) {
            
            return false;
          }
        }
        return true;
      }

      public Builder mergeFrom(
          com.google.protobuf.CodedInputStream input,
          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
          throws java.io.IOException {
        bio.pih.genoogle.io.proto.Io.StoredDatabank parsedMessage = null;
        try {
          parsedMessage = PARSER.parsePartialFrom(input, extensionRegistry);
        } catch (com.google.protobuf.InvalidProtocolBufferException e) {
          parsedMessage = (bio.pih.genoogle.io.proto.Io.StoredDatabank) e.getUnfinishedMessage();
          throw e;
        } finally {
          if (parsedMessage != null) {
            mergeFrom(parsedMessage);
          }
        }
        return this;
      }
      private int bitField0_;

      private bio.pih.genoogle.io.proto.Io.StoredDatabank.SequenceType type_ = bio.pih.genoogle.io.proto.Io.StoredDatabank.SequenceType.DNA;
      /**
       * <code>required .proto.StoredDatabank.SequenceType type = 1;</code>
       */
      public boolean hasType() {
        return ((bitField0_ & 0x00000001) == 0x00000001);
      }
      /**
       * <code>required .proto.StoredDatabank.SequenceType type = 1;</code>
       */
      public bio.pih.genoogle.io.proto.Io.StoredDatabank.SequenceType getType() {
        return type_;
      }
      /**
       * <code>required .proto.StoredDatabank.SequenceType type = 1;</code>
       */
      public Builder setType(bio.pih.genoogle.io.proto.Io.StoredDatabank.SequenceType value) {
        if (value == null) {
          throw new NullPointerException();
        }
        bitField0_ |= 0x00000001;
        type_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required .proto.StoredDatabank.SequenceType type = 1;</code>
       */
      public Builder clearType() {
        bitField0_ = (bitField0_ & ~0x00000001);
        type_ = bio.pih.genoogle.io.proto.Io.StoredDatabank.SequenceType.DNA;
        onChanged();
        return this;
      }

      private int subSequenceLength_ ;
      /**
       * <code>required int32 subSequenceLength = 2;</code>
       */
      public boolean hasSubSequenceLength() {
        return ((bitField0_ & 0x00000002) == 0x00000002);
      }
      /**
       * <code>required int32 subSequenceLength = 2;</code>
       */
      public int getSubSequenceLength() {
        return subSequenceLength_;
      }
      /**
       * <code>required int32 subSequenceLength = 2;</code>
       */
      public Builder setSubSequenceLength(int value) {
        bitField0_ |= 0x00000002;
        subSequenceLength_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required int32 subSequenceLength = 2;</code>
       */
      public Builder clearSubSequenceLength() {
        bitField0_ = (bitField0_ & ~0x00000002);
        subSequenceLength_ = 0;
        onChanged();
        return this;
      }

      private java.lang.Object mask_ = "";
      /**
       * <code>optional string mask = 3;</code>
       */
      public boolean hasMask() {
        return ((bitField0_ & 0x00000004) == 0x00000004);
      }
      /**
       * <code>optional string mask = 3;</code>
       */
      public java.lang.String getMask() {
        java.lang.Object ref = mask_;
        if (!(ref instanceof java.lang.String)) {
          com.google.protobuf.ByteString bs =
              (com.google.protobuf.ByteString) ref;
          java.lang.String s = bs.toStringUtf8();
          if (bs.isValidUtf8()) {
            mask_ = s;
          }
          return s;
        } else {
          return (java.lang.String) ref;
        }
      }
      /**
       * <code>optional string mask = 3;</code>
       */
      public com.google.protobuf.ByteString
          getMaskBytes() {
        java.lang.Object ref = mask_;
        if (ref instanceof String) {
          com.google.protobuf.ByteString b = 
              com.google.protobuf.ByteString.copyFromUtf8(
                  (java.lang.String) ref);
          mask_ = b;
          return b;
        } else {
          return (com.google.protobuf.ByteString) ref;
        }
      }
      /**
       * <code>optional string mask = 3;</code>
       */
      public Builder setMask(
          java.lang.String value) {
        if (value == null) {
    throw new NullPointerException();
  }
  bitField0_ |= 0x00000004;
        mask_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>optional string mask = 3;</code>
       */
      public Builder clearMask() {
        bitField0_ = (bitField0_ & ~0x00000004);
        mask_ = getDefaultInstance().getMask();
        onChanged();
        return this;
      }
      /**
       * <code>optional string mask = 3;</code>
       */
      public Builder setMaskBytes(
          com.google.protobuf.ByteString value) {
        if (value == null) {
    throw new NullPointerException();
  }
  bitField0_ |= 0x00000004;
        mask_ = value;
        onChanged();
        return this;
      }

      private int lowComplexityFilter_ ;
      /**
       * <code>optional int32 lowComplexityFilter = 4;</code>
       */
      public boolean hasLowComplexityFilter() {
        return ((bitField0_ & 0x00000008) == 0x00000008);
      }
      /**
       * <code>optional int32 lowComplexityFilter = 4;</code>
       */
      public int getLowComplexityFilter() {
        return lowComplexityFilter_;
      }
      /**
       * <code>optional int32 lowComplexityFilter = 4;</code>
       */
      public Builder setLowComplexityFilter(int value) {
        bitField0_ |= 0x00000008;
        lowComplexityFilter_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>optional int32 lowComplexityFilter = 4;</code>
       */
      public Builder clearLowComplexityFilter() {
        bitField0_ = (bitField0_ & ~0x00000008);
        lowComplexityFilter_ = 0;
        onChanged();
        return this;
      }

      private int qtdSequences_ ;
      /**
       * <code>required int32 qtdSequences = 5;</code>
       */
      public boolean hasQtdSequences() {
        return ((bitField0_ & 0x00000010) == 0x00000010);
      }
      /**
       * <code>required int32 qtdSequences = 5;</code>
       */
      public int getQtdSequences() {
        return qtdSequences_;
      }
      /**
       * <code>required int32 qtdSequences = 5;</code>
       */
      public Builder setQtdSequences(int value) {
        bitField0_ |= 0x00000010;
        qtdSequences_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required int32 qtdSequences = 5;</code>
       */
      public Builder clearQtdSequences() {
        bitField0_ = (bitField0_ & ~0x00000010);
        qtdSequences_ = 0;
        onChanged();
        return this;
      }

      private long qtdBases_ ;
      /**
       * <code>required int64 qtdBases = 6;</code>
       */
      public boolean hasQtdBases() {
        return ((bitField0_ & 0x00000020) == 0x00000020);
      }
      /**
       * <code>required int64 qtdBases = 6;</code>
       */
      public long getQtdBases() {
        return qtdBases_;
      }
      /**
       * <code>required int64 qtdBases = 6;</code>
       */
      public Builder setQtdBases(long value) {
        bitField0_ |= 0x00000020;
        qtdBases_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required int64 qtdBases = 6;</code>
       */
      public Builder clearQtdBases() {
        bitField0_ = (bitField0_ & ~0x00000020);
        qtdBases_ = 0L;
        onChanged();
        return this;
      }

      private java.util.List<bio.pih.genoogle.io.proto.Io.StoredSequenceInfo> sequencesInfo_ =
        java.util.Collections.emptyList();
      private void ensureSequencesInfoIsMutable() {
        if (!((bitField0_ & 0x00000040) == 0x00000040)) {
          sequencesInfo_ = new java.util.ArrayList<bio.pih.genoogle.io.proto.Io.StoredSequenceInfo>(sequencesInfo_);
          bitField0_ |= 0x00000040;
         }
      }

      private com.google.protobuf.RepeatedFieldBuilder<
          bio.pih.genoogle.io.proto.Io.StoredSequenceInfo, bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.Builder, bio.pih.genoogle.io.proto.Io.StoredSequenceInfoOrBuilder> sequencesInfoBuilder_;

      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public java.util.List<bio.pih.genoogle.io.proto.Io.StoredSequenceInfo> getSequencesInfoList() {
        if (sequencesInfoBuilder_ == null) {
          return java.util.Collections.unmodifiableList(sequencesInfo_);
        } else {
          return sequencesInfoBuilder_.getMessageList();
        }
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public int getSequencesInfoCount() {
        if (sequencesInfoBuilder_ == null) {
          return sequencesInfo_.size();
        } else {
          return sequencesInfoBuilder_.getCount();
        }
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public bio.pih.genoogle.io.proto.Io.StoredSequenceInfo getSequencesInfo(int index) {
        if (sequencesInfoBuilder_ == null) {
          return sequencesInfo_.get(index);
        } else {
          return sequencesInfoBuilder_.getMessage(index);
        }
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public Builder setSequencesInfo(
          int index, bio.pih.genoogle.io.proto.Io.StoredSequenceInfo value) {
        if (sequencesInfoBuilder_ == null) {
          if (value == null) {
            throw new NullPointerException();
          }
          ensureSequencesInfoIsMutable();
          sequencesInfo_.set(index, value);
          onChanged();
        } else {
          sequencesInfoBuilder_.setMessage(index, value);
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public Builder setSequencesInfo(
          int index, bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.Builder builderForValue) {
        if (sequencesInfoBuilder_ == null) {
          ensureSequencesInfoIsMutable();
          sequencesInfo_.set(index, builderForValue.build());
          onChanged();
        } else {
          sequencesInfoBuilder_.setMessage(index, builderForValue.build());
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public Builder addSequencesInfo(bio.pih.genoogle.io.proto.Io.StoredSequenceInfo value) {
        if (sequencesInfoBuilder_ == null) {
          if (value == null) {
            throw new NullPointerException();
          }
          ensureSequencesInfoIsMutable();
          sequencesInfo_.add(value);
          onChanged();
        } else {
          sequencesInfoBuilder_.addMessage(value);
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public Builder addSequencesInfo(
          int index, bio.pih.genoogle.io.proto.Io.StoredSequenceInfo value) {
        if (sequencesInfoBuilder_ == null) {
          if (value == null) {
            throw new NullPointerException();
          }
          ensureSequencesInfoIsMutable();
          sequencesInfo_.add(index, value);
          onChanged();
        } else {
          sequencesInfoBuilder_.addMessage(index, value);
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public Builder addSequencesInfo(
          bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.Builder builderForValue) {
        if (sequencesInfoBuilder_ == null) {
          ensureSequencesInfoIsMutable();
          sequencesInfo_.add(builderForValue.build());
          onChanged();
        } else {
          sequencesInfoBuilder_.addMessage(builderForValue.build());
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public Builder addSequencesInfo(
          int index, bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.Builder builderForValue) {
        if (sequencesInfoBuilder_ == null) {
          ensureSequencesInfoIsMutable();
          sequencesInfo_.add(index, builderForValue.build());
          onChanged();
        } else {
          sequencesInfoBuilder_.addMessage(index, builderForValue.build());
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public Builder addAllSequencesInfo(
          java.lang.Iterable<? extends bio.pih.genoogle.io.proto.Io.StoredSequenceInfo> values) {
        if (sequencesInfoBuilder_ == null) {
          ensureSequencesInfoIsMutable();
          com.google.protobuf.AbstractMessageLite.Builder.addAll(
              values, sequencesInfo_);
          onChanged();
        } else {
          sequencesInfoBuilder_.addAllMessages(values);
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public Builder clearSequencesInfo() {
        if (sequencesInfoBuilder_ == null) {
          sequencesInfo_ = java.util.Collections.emptyList();
          bitField0_ = (bitField0_ & ~0x00000040);
          onChanged();
        } else {
          sequencesInfoBuilder_.clear();
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public Builder removeSequencesInfo(int index) {
        if (sequencesInfoBuilder_ == null) {
          ensureSequencesInfoIsMutable();
          sequencesInfo_.remove(index);
          onChanged();
        } else {
          sequencesInfoBuilder_.remove(index);
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.Builder getSequencesInfoBuilder(
          int index) {
        return getSequencesInfoFieldBuilder().getBuilder(index);
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public bio.pih.genoogle.io.proto.Io.StoredSequenceInfoOrBuilder getSequencesInfoOrBuilder(
          int index) {
        if (sequencesInfoBuilder_ == null) {
          return sequencesInfo_.get(index);  } else {
          return sequencesInfoBuilder_.getMessageOrBuilder(index);
        }
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public java.util.List<? extends bio.pih.genoogle.io.proto.Io.StoredSequenceInfoOrBuilder> 
           getSequencesInfoOrBuilderList() {
        if (sequencesInfoBuilder_ != null) {
          return sequencesInfoBuilder_.getMessageOrBuilderList();
        } else {
          return java.util.Collections.unmodifiableList(sequencesInfo_);
        }
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.Builder addSequencesInfoBuilder() {
        return getSequencesInfoFieldBuilder().addBuilder(
            bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.getDefaultInstance());
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.Builder addSequencesInfoBuilder(
          int index) {
        return getSequencesInfoFieldBuilder().addBuilder(
            index, bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.getDefaultInstance());
      }
      /**
       * <code>repeated .proto.StoredSequenceInfo sequencesInfo = 7;</code>
       */
      public java.util.List<bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.Builder> 
           getSequencesInfoBuilderList() {
        return getSequencesInfoFieldBuilder().getBuilderList();
      }
      private com.google.protobuf.RepeatedFieldBuilder<
          bio.pih.genoogle.io.proto.Io.StoredSequenceInfo, bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.Builder, bio.pih.genoogle.io.proto.Io.StoredSequenceInfoOrBuilder> 
          getSequencesInfoFieldBuilder() {
        if (sequencesInfoBuilder_ == null) {
          sequencesInfoBuilder_ = new com.google.protobuf.RepeatedFieldBuilder<
              bio.pih.genoogle.io.proto.Io.StoredSequenceInfo, bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.Builder, bio.pih.genoogle.io.proto.Io.StoredSequenceInfoOrBuilder>(
                  sequencesInfo_,
                  ((bitField0_ & 0x00000040) == 0x00000040),
                  getParentForChildren(),
                  isClean());
          sequencesInfo_ = null;
        }
        return sequencesInfoBuilder_;
      }

      // @@protoc_insertion_point(builder_scope:proto.StoredDatabank)
    }

    static {
      defaultInstance = new StoredDatabank(true);
      defaultInstance.initFields();
    }

    // @@protoc_insertion_point(class_scope:proto.StoredDatabank)
  }

  public interface StoredSequenceInfoOrBuilder extends
      // @@protoc_insertion_point(interface_extends:proto.StoredSequenceInfo)
      com.google.protobuf.MessageOrBuilder {

    /**
     * <code>required int32 id = 1;</code>
     */
    boolean hasId();
    /**
     * <code>required int32 id = 1;</code>
     */
    int getId();

    /**
     * <code>required int64 offset = 2;</code>
     */
    boolean hasOffset();
    /**
     * <code>required int64 offset = 2;</code>
     */
    long getOffset();

    /**
     * <code>required int32 length = 3;</code>
     */
    boolean hasLength();
    /**
     * <code>required int32 length = 3;</code>
     */
    int getLength();
  }
  /**
   * Protobuf type {@code proto.StoredSequenceInfo}
   */
  public static final class StoredSequenceInfo extends
      com.google.protobuf.GeneratedMessage implements
      // @@protoc_insertion_point(message_implements:proto.StoredSequenceInfo)
      StoredSequenceInfoOrBuilder {
    // Use StoredSequenceInfo.newBuilder() to construct.
    private StoredSequenceInfo(com.google.protobuf.GeneratedMessage.Builder<?> builder) {
      super(builder);
      this.unknownFields = builder.getUnknownFields();
    }
    private StoredSequenceInfo(boolean noInit) { this.unknownFields = com.google.protobuf.UnknownFieldSet.getDefaultInstance(); }

    private static final StoredSequenceInfo defaultInstance;
    public static StoredSequenceInfo getDefaultInstance() {
      return defaultInstance;
    }

    public StoredSequenceInfo getDefaultInstanceForType() {
      return defaultInstance;
    }

    private final com.google.protobuf.UnknownFieldSet unknownFields;
    @java.lang.Override
    public final com.google.protobuf.UnknownFieldSet
        getUnknownFields() {
      return this.unknownFields;
    }
    private StoredSequenceInfo(
        com.google.protobuf.CodedInputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      initFields();
      int mutable_bitField0_ = 0;
      com.google.protobuf.UnknownFieldSet.Builder unknownFields =
          com.google.protobuf.UnknownFieldSet.newBuilder();
      try {
        boolean done = false;
        while (!done) {
          int tag = input.readTag();
          switch (tag) {
            case 0:
              done = true;
              break;
            default: {
              if (!parseUnknownField(input, unknownFields,
                                     extensionRegistry, tag)) {
                done = true;
              }
              break;
            }
            case 8: {
              bitField0_ |= 0x00000001;
              id_ = input.readInt32();
              break;
            }
            case 16: {
              bitField0_ |= 0x00000002;
              offset_ = input.readInt64();
              break;
            }
            case 24: {
              bitField0_ |= 0x00000004;
              length_ = input.readInt32();
              break;
            }
          }
        }
      } catch (com.google.protobuf.InvalidProtocolBufferException e) {
        throw e.setUnfinishedMessage(this);
      } catch (java.io.IOException e) {
        throw new com.google.protobuf.InvalidProtocolBufferException(
            e.getMessage()).setUnfinishedMessage(this);
      } finally {
        this.unknownFields = unknownFields.build();
        makeExtensionsImmutable();
      }
    }
    public static final com.google.protobuf.Descriptors.Descriptor
        getDescriptor() {
      return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSequenceInfo_descriptor;
    }

    protected com.google.protobuf.GeneratedMessage.FieldAccessorTable
        internalGetFieldAccessorTable() {
      return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSequenceInfo_fieldAccessorTable
          .ensureFieldAccessorsInitialized(
              bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.class, bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.Builder.class);
    }

    public static com.google.protobuf.Parser<StoredSequenceInfo> PARSER =
        new com.google.protobuf.AbstractParser<StoredSequenceInfo>() {
      public StoredSequenceInfo parsePartialFrom(
          com.google.protobuf.CodedInputStream input,
          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
          throws com.google.protobuf.InvalidProtocolBufferException {
        return new StoredSequenceInfo(input, extensionRegistry);
      }
    };

    @java.lang.Override
    public com.google.protobuf.Parser<StoredSequenceInfo> getParserForType() {
      return PARSER;
    }

    private int bitField0_;
    public static final int ID_FIELD_NUMBER = 1;
    private int id_;
    /**
     * <code>required int32 id = 1;</code>
     */
    public boolean hasId() {
      return ((bitField0_ & 0x00000001) == 0x00000001);
    }
    /**
     * <code>required int32 id = 1;</code>
     */
    public int getId() {
      return id_;
    }

    public static final int OFFSET_FIELD_NUMBER = 2;
    private long offset_;
    /**
     * <code>required int64 offset = 2;</code>
     */
    public boolean hasOffset() {
      return ((bitField0_ & 0x00000002) == 0x00000002);
    }
    /**
     * <code>required int64 offset = 2;</code>
     */
    public long getOffset() {
      return offset_;
    }

    public static final int LENGTH_FIELD_NUMBER = 3;
    private int length_;
    /**
     * <code>required int32 length = 3;</code>
     */
    public boolean hasLength() {
      return ((bitField0_ & 0x00000004) == 0x00000004);
    }
    /**
     * <code>required int32 length = 3;</code>
     */
    public int getLength() {
      return length_;
    }

    private void initFields() {
      id_ = 0;
      offset_ = 0L;
      length_ = 0;
    }
    private byte memoizedIsInitialized = -1;
    public final boolean isInitialized() {
      byte isInitialized = memoizedIsInitialized;
      if (isInitialized == 1) return true;
      if (isInitialized == 0) return false;

      if (!hasId()) {
        memoizedIsInitialized = 0;
        return false;
      }
      if (!hasOffset()) {
        memoizedIsInitialized = 0;
        return false;
      }
      if (!hasLength()) {
        memoizedIsInitialized = 0;
        return false;
      }
      memoizedIsInitialized = 1;
      return true;
    }

    public void writeTo(com.google.protobuf.CodedOutputStream output)
                        throws java.io.IOException {
      getSerializedSize();
      if (((bitField0_ & 0x00000001) == 0x00000001)) {
        output.writeInt32(1, id_);
      }
      if (((bitField0_ & 0x00000002) == 0x00000002)) {
        output.writeInt64(2, offset_);
      }
      if (((bitField0_ & 0x00000004) == 0x00000004)) {
        output.writeInt32(3, length_);
      }
      getUnknownFields().writeTo(output);
    }

    private int memoizedSerializedSize = -1;
    public int getSerializedSize() {
      int size = memoizedSerializedSize;
      if (size != -1) return size;

      size = 0;
      if (((bitField0_ & 0x00000001) == 0x00000001)) {
        size += com.google.protobuf.CodedOutputStream
          .computeInt32Size(1, id_);
      }
      if (((bitField0_ & 0x00000002) == 0x00000002)) {
        size += com.google.protobuf.CodedOutputStream
          .computeInt64Size(2, offset_);
      }
      if (((bitField0_ & 0x00000004) == 0x00000004)) {
        size += com.google.protobuf.CodedOutputStream
          .computeInt32Size(3, length_);
      }
      size += getUnknownFields().getSerializedSize();
      memoizedSerializedSize = size;
      return size;
    }

    private static final long serialVersionUID = 0L;
    @java.lang.Override
    protected java.lang.Object writeReplace()
        throws java.io.ObjectStreamException {
      return super.writeReplace();
    }

    public static bio.pih.genoogle.io.proto.Io.StoredSequenceInfo parseFrom(
        com.google.protobuf.ByteString data)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequenceInfo parseFrom(
        com.google.protobuf.ByteString data,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequenceInfo parseFrom(byte[] data)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequenceInfo parseFrom(
        byte[] data,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequenceInfo parseFrom(java.io.InputStream input)
        throws java.io.IOException {
      return PARSER.parseFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequenceInfo parseFrom(
        java.io.InputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseFrom(input, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequenceInfo parseDelimitedFrom(java.io.InputStream input)
        throws java.io.IOException {
      return PARSER.parseDelimitedFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequenceInfo parseDelimitedFrom(
        java.io.InputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseDelimitedFrom(input, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequenceInfo parseFrom(
        com.google.protobuf.CodedInputStream input)
        throws java.io.IOException {
      return PARSER.parseFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequenceInfo parseFrom(
        com.google.protobuf.CodedInputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseFrom(input, extensionRegistry);
    }

    public static Builder newBuilder() { return Builder.create(); }
    public Builder newBuilderForType() { return newBuilder(); }
    public static Builder newBuilder(bio.pih.genoogle.io.proto.Io.StoredSequenceInfo prototype) {
      return newBuilder().mergeFrom(prototype);
    }
    public Builder toBuilder() { return newBuilder(this); }

    @java.lang.Override
    protected Builder newBuilderForType(
        com.google.protobuf.GeneratedMessage.BuilderParent parent) {
      Builder builder = new Builder(parent);
      return builder;
    }
    /**
     * Protobuf type {@code proto.StoredSequenceInfo}
     */
    public static final class Builder extends
        com.google.protobuf.GeneratedMessage.Builder<Builder> implements
        // @@protoc_insertion_point(builder_implements:proto.StoredSequenceInfo)
        bio.pih.genoogle.io.proto.Io.StoredSequenceInfoOrBuilder {
      public static final com.google.protobuf.Descriptors.Descriptor
          getDescriptor() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSequenceInfo_descriptor;
      }

      protected com.google.protobuf.GeneratedMessage.FieldAccessorTable
          internalGetFieldAccessorTable() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSequenceInfo_fieldAccessorTable
            .ensureFieldAccessorsInitialized(
                bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.class, bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.Builder.class);
      }

      // Construct using bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.newBuilder()
      private Builder() {
        maybeForceBuilderInitialization();
      }

      private Builder(
          com.google.protobuf.GeneratedMessage.BuilderParent parent) {
        super(parent);
        maybeForceBuilderInitialization();
      }
      private void maybeForceBuilderInitialization() {
        if (com.google.protobuf.GeneratedMessage.alwaysUseFieldBuilders) {
        }
      }
      private static Builder create() {
        return new Builder();
      }

      public Builder clear() {
        super.clear();
        id_ = 0;
        bitField0_ = (bitField0_ & ~0x00000001);
        offset_ = 0L;
        bitField0_ = (bitField0_ & ~0x00000002);
        length_ = 0;
        bitField0_ = (bitField0_ & ~0x00000004);
        return this;
      }

      public Builder clone() {
        return create().mergeFrom(buildPartial());
      }

      public com.google.protobuf.Descriptors.Descriptor
          getDescriptorForType() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSequenceInfo_descriptor;
      }

      public bio.pih.genoogle.io.proto.Io.StoredSequenceInfo getDefaultInstanceForType() {
        return bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.getDefaultInstance();
      }

      public bio.pih.genoogle.io.proto.Io.StoredSequenceInfo build() {
        bio.pih.genoogle.io.proto.Io.StoredSequenceInfo result = buildPartial();
        if (!result.isInitialized()) {
          throw newUninitializedMessageException(result);
        }
        return result;
      }

      public bio.pih.genoogle.io.proto.Io.StoredSequenceInfo buildPartial() {
        bio.pih.genoogle.io.proto.Io.StoredSequenceInfo result = new bio.pih.genoogle.io.proto.Io.StoredSequenceInfo(this);
        int from_bitField0_ = bitField0_;
        int to_bitField0_ = 0;
        if (((from_bitField0_ & 0x00000001) == 0x00000001)) {
          to_bitField0_ |= 0x00000001;
        }
        result.id_ = id_;
        if (((from_bitField0_ & 0x00000002) == 0x00000002)) {
          to_bitField0_ |= 0x00000002;
        }
        result.offset_ = offset_;
        if (((from_bitField0_ & 0x00000004) == 0x00000004)) {
          to_bitField0_ |= 0x00000004;
        }
        result.length_ = length_;
        result.bitField0_ = to_bitField0_;
        onBuilt();
        return result;
      }

      public Builder mergeFrom(com.google.protobuf.Message other) {
        if (other instanceof bio.pih.genoogle.io.proto.Io.StoredSequenceInfo) {
          return mergeFrom((bio.pih.genoogle.io.proto.Io.StoredSequenceInfo)other);
        } else {
          super.mergeFrom(other);
          return this;
        }
      }

      public Builder mergeFrom(bio.pih.genoogle.io.proto.Io.StoredSequenceInfo other) {
        if (other == bio.pih.genoogle.io.proto.Io.StoredSequenceInfo.getDefaultInstance()) return this;
        if (other.hasId()) {
          setId(other.getId());
        }
        if (other.hasOffset()) {
          setOffset(other.getOffset());
        }
        if (other.hasLength()) {
          setLength(other.getLength());
        }
        this.mergeUnknownFields(other.getUnknownFields());
        return this;
      }

      public final boolean isInitialized() {
        if (!hasId()) {
          
          return false;
        }
        if (!hasOffset()) {
          
          return false;
        }
        if (!hasLength()) {
          
          return false;
        }
        return true;
      }

      public Builder mergeFrom(
          com.google.protobuf.CodedInputStream input,
          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
          throws java.io.IOException {
        bio.pih.genoogle.io.proto.Io.StoredSequenceInfo parsedMessage = null;
        try {
          parsedMessage = PARSER.parsePartialFrom(input, extensionRegistry);
        } catch (com.google.protobuf.InvalidProtocolBufferException e) {
          parsedMessage = (bio.pih.genoogle.io.proto.Io.StoredSequenceInfo) e.getUnfinishedMessage();
          throw e;
        } finally {
          if (parsedMessage != null) {
            mergeFrom(parsedMessage);
          }
        }
        return this;
      }
      private int bitField0_;

      private int id_ ;
      /**
       * <code>required int32 id = 1;</code>
       */
      public boolean hasId() {
        return ((bitField0_ & 0x00000001) == 0x00000001);
      }
      /**
       * <code>required int32 id = 1;</code>
       */
      public int getId() {
        return id_;
      }
      /**
       * <code>required int32 id = 1;</code>
       */
      public Builder setId(int value) {
        bitField0_ |= 0x00000001;
        id_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required int32 id = 1;</code>
       */
      public Builder clearId() {
        bitField0_ = (bitField0_ & ~0x00000001);
        id_ = 0;
        onChanged();
        return this;
      }

      private long offset_ ;
      /**
       * <code>required int64 offset = 2;</code>
       */
      public boolean hasOffset() {
        return ((bitField0_ & 0x00000002) == 0x00000002);
      }
      /**
       * <code>required int64 offset = 2;</code>
       */
      public long getOffset() {
        return offset_;
      }
      /**
       * <code>required int64 offset = 2;</code>
       */
      public Builder setOffset(long value) {
        bitField0_ |= 0x00000002;
        offset_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required int64 offset = 2;</code>
       */
      public Builder clearOffset() {
        bitField0_ = (bitField0_ & ~0x00000002);
        offset_ = 0L;
        onChanged();
        return this;
      }

      private int length_ ;
      /**
       * <code>required int32 length = 3;</code>
       */
      public boolean hasLength() {
        return ((bitField0_ & 0x00000004) == 0x00000004);
      }
      /**
       * <code>required int32 length = 3;</code>
       */
      public int getLength() {
        return length_;
      }
      /**
       * <code>required int32 length = 3;</code>
       */
      public Builder setLength(int value) {
        bitField0_ |= 0x00000004;
        length_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required int32 length = 3;</code>
       */
      public Builder clearLength() {
        bitField0_ = (bitField0_ & ~0x00000004);
        length_ = 0;
        onChanged();
        return this;
      }

      // @@protoc_insertion_point(builder_scope:proto.StoredSequenceInfo)
    }

    static {
      defaultInstance = new StoredSequenceInfo(true);
      defaultInstance.initFields();
    }

    // @@protoc_insertion_point(class_scope:proto.StoredSequenceInfo)
  }

  public interface StoredSequenceOrBuilder extends
      // @@protoc_insertion_point(interface_extends:proto.StoredSequence)
      com.google.protobuf.MessageOrBuilder {

    /**
     * <code>required int32 id = 1;</code>
     */
    boolean hasId();
    /**
     * <code>required int32 id = 1;</code>
     */
    int getId();

    /**
     * <code>required string type = 2;</code>
     */
    boolean hasType();
    /**
     * <code>required string type = 2;</code>
     */
    java.lang.String getType();
    /**
     * <code>required string type = 2;</code>
     */
    com.google.protobuf.ByteString
        getTypeBytes();

    /**
     * <code>required string gi = 3;</code>
     */
    boolean hasGi();
    /**
     * <code>required string gi = 3;</code>
     */
    java.lang.String getGi();
    /**
     * <code>required string gi = 3;</code>
     */
    com.google.protobuf.ByteString
        getGiBytes();

    /**
     * <code>required string name = 4;</code>
     */
    boolean hasName();
    /**
     * <code>required string name = 4;</code>
     */
    java.lang.String getName();
    /**
     * <code>required string name = 4;</code>
     */
    com.google.protobuf.ByteString
        getNameBytes();

    /**
     * <code>required string accession = 5;</code>
     */
    boolean hasAccession();
    /**
     * <code>required string accession = 5;</code>
     */
    java.lang.String getAccession();
    /**
     * <code>required string accession = 5;</code>
     */
    com.google.protobuf.ByteString
        getAccessionBytes();

    /**
     * <code>required string description = 6;</code>
     */
    boolean hasDescription();
    /**
     * <code>required string description = 6;</code>
     */
    java.lang.String getDescription();
    /**
     * <code>required string description = 6;</code>
     */
    com.google.protobuf.ByteString
        getDescriptionBytes();

    /**
     * <code>required bytes encodedSequence = 7;</code>
     */
    boolean hasEncodedSequence();
    /**
     * <code>required bytes encodedSequence = 7;</code>
     */
    com.google.protobuf.ByteString getEncodedSequence();
  }
  /**
   * Protobuf type {@code proto.StoredSequence}
   */
  public static final class StoredSequence extends
      com.google.protobuf.GeneratedMessage implements
      // @@protoc_insertion_point(message_implements:proto.StoredSequence)
      StoredSequenceOrBuilder {
    // Use StoredSequence.newBuilder() to construct.
    private StoredSequence(com.google.protobuf.GeneratedMessage.Builder<?> builder) {
      super(builder);
      this.unknownFields = builder.getUnknownFields();
    }
    private StoredSequence(boolean noInit) { this.unknownFields = com.google.protobuf.UnknownFieldSet.getDefaultInstance(); }

    private static final StoredSequence defaultInstance;
    public static StoredSequence getDefaultInstance() {
      return defaultInstance;
    }

    public StoredSequence getDefaultInstanceForType() {
      return defaultInstance;
    }

    private final com.google.protobuf.UnknownFieldSet unknownFields;
    @java.lang.Override
    public final com.google.protobuf.UnknownFieldSet
        getUnknownFields() {
      return this.unknownFields;
    }
    private StoredSequence(
        com.google.protobuf.CodedInputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      initFields();
      int mutable_bitField0_ = 0;
      com.google.protobuf.UnknownFieldSet.Builder unknownFields =
          com.google.protobuf.UnknownFieldSet.newBuilder();
      try {
        boolean done = false;
        while (!done) {
          int tag = input.readTag();
          switch (tag) {
            case 0:
              done = true;
              break;
            default: {
              if (!parseUnknownField(input, unknownFields,
                                     extensionRegistry, tag)) {
                done = true;
              }
              break;
            }
            case 8: {
              bitField0_ |= 0x00000001;
              id_ = input.readInt32();
              break;
            }
            case 18: {
              com.google.protobuf.ByteString bs = input.readBytes();
              bitField0_ |= 0x00000002;
              type_ = bs;
              break;
            }
            case 26: {
              com.google.protobuf.ByteString bs = input.readBytes();
              bitField0_ |= 0x00000004;
              gi_ = bs;
              break;
            }
            case 34: {
              com.google.protobuf.ByteString bs = input.readBytes();
              bitField0_ |= 0x00000008;
              name_ = bs;
              break;
            }
            case 42: {
              com.google.protobuf.ByteString bs = input.readBytes();
              bitField0_ |= 0x00000010;
              accession_ = bs;
              break;
            }
            case 50: {
              com.google.protobuf.ByteString bs = input.readBytes();
              bitField0_ |= 0x00000020;
              description_ = bs;
              break;
            }
            case 58: {
              bitField0_ |= 0x00000040;
              encodedSequence_ = input.readBytes();
              break;
            }
          }
        }
      } catch (com.google.protobuf.InvalidProtocolBufferException e) {
        throw e.setUnfinishedMessage(this);
      } catch (java.io.IOException e) {
        throw new com.google.protobuf.InvalidProtocolBufferException(
            e.getMessage()).setUnfinishedMessage(this);
      } finally {
        this.unknownFields = unknownFields.build();
        makeExtensionsImmutable();
      }
    }
    public static final com.google.protobuf.Descriptors.Descriptor
        getDescriptor() {
      return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSequence_descriptor;
    }

    protected com.google.protobuf.GeneratedMessage.FieldAccessorTable
        internalGetFieldAccessorTable() {
      return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSequence_fieldAccessorTable
          .ensureFieldAccessorsInitialized(
              bio.pih.genoogle.io.proto.Io.StoredSequence.class, bio.pih.genoogle.io.proto.Io.StoredSequence.Builder.class);
    }

    public static com.google.protobuf.Parser<StoredSequence> PARSER =
        new com.google.protobuf.AbstractParser<StoredSequence>() {
      public StoredSequence parsePartialFrom(
          com.google.protobuf.CodedInputStream input,
          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
          throws com.google.protobuf.InvalidProtocolBufferException {
        return new StoredSequence(input, extensionRegistry);
      }
    };

    @java.lang.Override
    public com.google.protobuf.Parser<StoredSequence> getParserForType() {
      return PARSER;
    }

    private int bitField0_;
    public static final int ID_FIELD_NUMBER = 1;
    private int id_;
    /**
     * <code>required int32 id = 1;</code>
     */
    public boolean hasId() {
      return ((bitField0_ & 0x00000001) == 0x00000001);
    }
    /**
     * <code>required int32 id = 1;</code>
     */
    public int getId() {
      return id_;
    }

    public static final int TYPE_FIELD_NUMBER = 2;
    private java.lang.Object type_;
    /**
     * <code>required string type = 2;</code>
     */
    public boolean hasType() {
      return ((bitField0_ & 0x00000002) == 0x00000002);
    }
    /**
     * <code>required string type = 2;</code>
     */
    public java.lang.String getType() {
      java.lang.Object ref = type_;
      if (ref instanceof java.lang.String) {
        return (java.lang.String) ref;
      } else {
        com.google.protobuf.ByteString bs = 
            (com.google.protobuf.ByteString) ref;
        java.lang.String s = bs.toStringUtf8();
        if (bs.isValidUtf8()) {
          type_ = s;
        }
        return s;
      }
    }
    /**
     * <code>required string type = 2;</code>
     */
    public com.google.protobuf.ByteString
        getTypeBytes() {
      java.lang.Object ref = type_;
      if (ref instanceof java.lang.String) {
        com.google.protobuf.ByteString b = 
            com.google.protobuf.ByteString.copyFromUtf8(
                (java.lang.String) ref);
        type_ = b;
        return b;
      } else {
        return (com.google.protobuf.ByteString) ref;
      }
    }

    public static final int GI_FIELD_NUMBER = 3;
    private java.lang.Object gi_;
    /**
     * <code>required string gi = 3;</code>
     */
    public boolean hasGi() {
      return ((bitField0_ & 0x00000004) == 0x00000004);
    }
    /**
     * <code>required string gi = 3;</code>
     */
    public java.lang.String getGi() {
      java.lang.Object ref = gi_;
      if (ref instanceof java.lang.String) {
        return (java.lang.String) ref;
      } else {
        com.google.protobuf.ByteString bs = 
            (com.google.protobuf.ByteString) ref;
        java.lang.String s = bs.toStringUtf8();
        if (bs.isValidUtf8()) {
          gi_ = s;
        }
        return s;
      }
    }
    /**
     * <code>required string gi = 3;</code>
     */
    public com.google.protobuf.ByteString
        getGiBytes() {
      java.lang.Object ref = gi_;
      if (ref instanceof java.lang.String) {
        com.google.protobuf.ByteString b = 
            com.google.protobuf.ByteString.copyFromUtf8(
                (java.lang.String) ref);
        gi_ = b;
        return b;
      } else {
        return (com.google.protobuf.ByteString) ref;
      }
    }

    public static final int NAME_FIELD_NUMBER = 4;
    private java.lang.Object name_;
    /**
     * <code>required string name = 4;</code>
     */
    public boolean hasName() {
      return ((bitField0_ & 0x00000008) == 0x00000008);
    }
    /**
     * <code>required string name = 4;</code>
     */
    public java.lang.String getName() {
      java.lang.Object ref = name_;
      if (ref instanceof java.lang.String) {
        return (java.lang.String) ref;
      } else {
        com.google.protobuf.ByteString bs = 
            (com.google.protobuf.ByteString) ref;
        java.lang.String s = bs.toStringUtf8();
        if (bs.isValidUtf8()) {
          name_ = s;
        }
        return s;
      }
    }
    /**
     * <code>required string name = 4;</code>
     */
    public com.google.protobuf.ByteString
        getNameBytes() {
      java.lang.Object ref = name_;
      if (ref instanceof java.lang.String) {
        com.google.protobuf.ByteString b = 
            com.google.protobuf.ByteString.copyFromUtf8(
                (java.lang.String) ref);
        name_ = b;
        return b;
      } else {
        return (com.google.protobuf.ByteString) ref;
      }
    }

    public static final int ACCESSION_FIELD_NUMBER = 5;
    private java.lang.Object accession_;
    /**
     * <code>required string accession = 5;</code>
     */
    public boolean hasAccession() {
      return ((bitField0_ & 0x00000010) == 0x00000010);
    }
    /**
     * <code>required string accession = 5;</code>
     */
    public java.lang.String getAccession() {
      java.lang.Object ref = accession_;
      if (ref instanceof java.lang.String) {
        return (java.lang.String) ref;
      } else {
        com.google.protobuf.ByteString bs = 
            (com.google.protobuf.ByteString) ref;
        java.lang.String s = bs.toStringUtf8();
        if (bs.isValidUtf8()) {
          accession_ = s;
        }
        return s;
      }
    }
    /**
     * <code>required string accession = 5;</code>
     */
    public com.google.protobuf.ByteString
        getAccessionBytes() {
      java.lang.Object ref = accession_;
      if (ref instanceof java.lang.String) {
        com.google.protobuf.ByteString b = 
            com.google.protobuf.ByteString.copyFromUtf8(
                (java.lang.String) ref);
        accession_ = b;
        return b;
      } else {
        return (com.google.protobuf.ByteString) ref;
      }
    }

    public static final int DESCRIPTION_FIELD_NUMBER = 6;
    private java.lang.Object description_;
    /**
     * <code>required string description = 6;</code>
     */
    public boolean hasDescription() {
      return ((bitField0_ & 0x00000020) == 0x00000020);
    }
    /**
     * <code>required string description = 6;</code>
     */
    public java.lang.String getDescription() {
      java.lang.Object ref = description_;
      if (ref instanceof java.lang.String) {
        return (java.lang.String) ref;
      } else {
        com.google.protobuf.ByteString bs = 
            (com.google.protobuf.ByteString) ref;
        java.lang.String s = bs.toStringUtf8();
        if (bs.isValidUtf8()) {
          description_ = s;
        }
        return s;
      }
    }
    /**
     * <code>required string description = 6;</code>
     */
    public com.google.protobuf.ByteString
        getDescriptionBytes() {
      java.lang.Object ref = description_;
      if (ref instanceof java.lang.String) {
        com.google.protobuf.ByteString b = 
            com.google.protobuf.ByteString.copyFromUtf8(
                (java.lang.String) ref);
        description_ = b;
        return b;
      } else {
        return (com.google.protobuf.ByteString) ref;
      }
    }

    public static final int ENCODEDSEQUENCE_FIELD_NUMBER = 7;
    private com.google.protobuf.ByteString encodedSequence_;
    /**
     * <code>required bytes encodedSequence = 7;</code>
     */
    public boolean hasEncodedSequence() {
      return ((bitField0_ & 0x00000040) == 0x00000040);
    }
    /**
     * <code>required bytes encodedSequence = 7;</code>
     */
    public com.google.protobuf.ByteString getEncodedSequence() {
      return encodedSequence_;
    }

    private void initFields() {
      id_ = 0;
      type_ = "";
      gi_ = "";
      name_ = "";
      accession_ = "";
      description_ = "";
      encodedSequence_ = com.google.protobuf.ByteString.EMPTY;
    }
    private byte memoizedIsInitialized = -1;
    public final boolean isInitialized() {
      byte isInitialized = memoizedIsInitialized;
      if (isInitialized == 1) return true;
      if (isInitialized == 0) return false;

      if (!hasId()) {
        memoizedIsInitialized = 0;
        return false;
      }
      if (!hasType()) {
        memoizedIsInitialized = 0;
        return false;
      }
      if (!hasGi()) {
        memoizedIsInitialized = 0;
        return false;
      }
      if (!hasName()) {
        memoizedIsInitialized = 0;
        return false;
      }
      if (!hasAccession()) {
        memoizedIsInitialized = 0;
        return false;
      }
      if (!hasDescription()) {
        memoizedIsInitialized = 0;
        return false;
      }
      if (!hasEncodedSequence()) {
        memoizedIsInitialized = 0;
        return false;
      }
      memoizedIsInitialized = 1;
      return true;
    }

    public void writeTo(com.google.protobuf.CodedOutputStream output)
                        throws java.io.IOException {
      getSerializedSize();
      if (((bitField0_ & 0x00000001) == 0x00000001)) {
        output.writeInt32(1, id_);
      }
      if (((bitField0_ & 0x00000002) == 0x00000002)) {
        output.writeBytes(2, getTypeBytes());
      }
      if (((bitField0_ & 0x00000004) == 0x00000004)) {
        output.writeBytes(3, getGiBytes());
      }
      if (((bitField0_ & 0x00000008) == 0x00000008)) {
        output.writeBytes(4, getNameBytes());
      }
      if (((bitField0_ & 0x00000010) == 0x00000010)) {
        output.writeBytes(5, getAccessionBytes());
      }
      if (((bitField0_ & 0x00000020) == 0x00000020)) {
        output.writeBytes(6, getDescriptionBytes());
      }
      if (((bitField0_ & 0x00000040) == 0x00000040)) {
        output.writeBytes(7, encodedSequence_);
      }
      getUnknownFields().writeTo(output);
    }

    private int memoizedSerializedSize = -1;
    public int getSerializedSize() {
      int size = memoizedSerializedSize;
      if (size != -1) return size;

      size = 0;
      if (((bitField0_ & 0x00000001) == 0x00000001)) {
        size += com.google.protobuf.CodedOutputStream
          .computeInt32Size(1, id_);
      }
      if (((bitField0_ & 0x00000002) == 0x00000002)) {
        size += com.google.protobuf.CodedOutputStream
          .computeBytesSize(2, getTypeBytes());
      }
      if (((bitField0_ & 0x00000004) == 0x00000004)) {
        size += com.google.protobuf.CodedOutputStream
          .computeBytesSize(3, getGiBytes());
      }
      if (((bitField0_ & 0x00000008) == 0x00000008)) {
        size += com.google.protobuf.CodedOutputStream
          .computeBytesSize(4, getNameBytes());
      }
      if (((bitField0_ & 0x00000010) == 0x00000010)) {
        size += com.google.protobuf.CodedOutputStream
          .computeBytesSize(5, getAccessionBytes());
      }
      if (((bitField0_ & 0x00000020) == 0x00000020)) {
        size += com.google.protobuf.CodedOutputStream
          .computeBytesSize(6, getDescriptionBytes());
      }
      if (((bitField0_ & 0x00000040) == 0x00000040)) {
        size += com.google.protobuf.CodedOutputStream
          .computeBytesSize(7, encodedSequence_);
      }
      size += getUnknownFields().getSerializedSize();
      memoizedSerializedSize = size;
      return size;
    }

    private static final long serialVersionUID = 0L;
    @java.lang.Override
    protected java.lang.Object writeReplace()
        throws java.io.ObjectStreamException {
      return super.writeReplace();
    }

    public static bio.pih.genoogle.io.proto.Io.StoredSequence parseFrom(
        com.google.protobuf.ByteString data)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequence parseFrom(
        com.google.protobuf.ByteString data,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequence parseFrom(byte[] data)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequence parseFrom(
        byte[] data,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequence parseFrom(java.io.InputStream input)
        throws java.io.IOException {
      return PARSER.parseFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequence parseFrom(
        java.io.InputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseFrom(input, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequence parseDelimitedFrom(java.io.InputStream input)
        throws java.io.IOException {
      return PARSER.parseDelimitedFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequence parseDelimitedFrom(
        java.io.InputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseDelimitedFrom(input, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequence parseFrom(
        com.google.protobuf.CodedInputStream input)
        throws java.io.IOException {
      return PARSER.parseFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSequence parseFrom(
        com.google.protobuf.CodedInputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseFrom(input, extensionRegistry);
    }

    public static Builder newBuilder() { return Builder.create(); }
    public Builder newBuilderForType() { return newBuilder(); }
    public static Builder newBuilder(bio.pih.genoogle.io.proto.Io.StoredSequence prototype) {
      return newBuilder().mergeFrom(prototype);
    }
    public Builder toBuilder() { return newBuilder(this); }

    @java.lang.Override
    protected Builder newBuilderForType(
        com.google.protobuf.GeneratedMessage.BuilderParent parent) {
      Builder builder = new Builder(parent);
      return builder;
    }
    /**
     * Protobuf type {@code proto.StoredSequence}
     */
    public static final class Builder extends
        com.google.protobuf.GeneratedMessage.Builder<Builder> implements
        // @@protoc_insertion_point(builder_implements:proto.StoredSequence)
        bio.pih.genoogle.io.proto.Io.StoredSequenceOrBuilder {
      public static final com.google.protobuf.Descriptors.Descriptor
          getDescriptor() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSequence_descriptor;
      }

      protected com.google.protobuf.GeneratedMessage.FieldAccessorTable
          internalGetFieldAccessorTable() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSequence_fieldAccessorTable
            .ensureFieldAccessorsInitialized(
                bio.pih.genoogle.io.proto.Io.StoredSequence.class, bio.pih.genoogle.io.proto.Io.StoredSequence.Builder.class);
      }

      // Construct using bio.pih.genoogle.io.proto.Io.StoredSequence.newBuilder()
      private Builder() {
        maybeForceBuilderInitialization();
      }

      private Builder(
          com.google.protobuf.GeneratedMessage.BuilderParent parent) {
        super(parent);
        maybeForceBuilderInitialization();
      }
      private void maybeForceBuilderInitialization() {
        if (com.google.protobuf.GeneratedMessage.alwaysUseFieldBuilders) {
        }
      }
      private static Builder create() {
        return new Builder();
      }

      public Builder clear() {
        super.clear();
        id_ = 0;
        bitField0_ = (bitField0_ & ~0x00000001);
        type_ = "";
        bitField0_ = (bitField0_ & ~0x00000002);
        gi_ = "";
        bitField0_ = (bitField0_ & ~0x00000004);
        name_ = "";
        bitField0_ = (bitField0_ & ~0x00000008);
        accession_ = "";
        bitField0_ = (bitField0_ & ~0x00000010);
        description_ = "";
        bitField0_ = (bitField0_ & ~0x00000020);
        encodedSequence_ = com.google.protobuf.ByteString.EMPTY;
        bitField0_ = (bitField0_ & ~0x00000040);
        return this;
      }

      public Builder clone() {
        return create().mergeFrom(buildPartial());
      }

      public com.google.protobuf.Descriptors.Descriptor
          getDescriptorForType() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSequence_descriptor;
      }

      public bio.pih.genoogle.io.proto.Io.StoredSequence getDefaultInstanceForType() {
        return bio.pih.genoogle.io.proto.Io.StoredSequence.getDefaultInstance();
      }

      public bio.pih.genoogle.io.proto.Io.StoredSequence build() {
        bio.pih.genoogle.io.proto.Io.StoredSequence result = buildPartial();
        if (!result.isInitialized()) {
          throw newUninitializedMessageException(result);
        }
        return result;
      }

      public bio.pih.genoogle.io.proto.Io.StoredSequence buildPartial() {
        bio.pih.genoogle.io.proto.Io.StoredSequence result = new bio.pih.genoogle.io.proto.Io.StoredSequence(this);
        int from_bitField0_ = bitField0_;
        int to_bitField0_ = 0;
        if (((from_bitField0_ & 0x00000001) == 0x00000001)) {
          to_bitField0_ |= 0x00000001;
        }
        result.id_ = id_;
        if (((from_bitField0_ & 0x00000002) == 0x00000002)) {
          to_bitField0_ |= 0x00000002;
        }
        result.type_ = type_;
        if (((from_bitField0_ & 0x00000004) == 0x00000004)) {
          to_bitField0_ |= 0x00000004;
        }
        result.gi_ = gi_;
        if (((from_bitField0_ & 0x00000008) == 0x00000008)) {
          to_bitField0_ |= 0x00000008;
        }
        result.name_ = name_;
        if (((from_bitField0_ & 0x00000010) == 0x00000010)) {
          to_bitField0_ |= 0x00000010;
        }
        result.accession_ = accession_;
        if (((from_bitField0_ & 0x00000020) == 0x00000020)) {
          to_bitField0_ |= 0x00000020;
        }
        result.description_ = description_;
        if (((from_bitField0_ & 0x00000040) == 0x00000040)) {
          to_bitField0_ |= 0x00000040;
        }
        result.encodedSequence_ = encodedSequence_;
        result.bitField0_ = to_bitField0_;
        onBuilt();
        return result;
      }

      public Builder mergeFrom(com.google.protobuf.Message other) {
        if (other instanceof bio.pih.genoogle.io.proto.Io.StoredSequence) {
          return mergeFrom((bio.pih.genoogle.io.proto.Io.StoredSequence)other);
        } else {
          super.mergeFrom(other);
          return this;
        }
      }

      public Builder mergeFrom(bio.pih.genoogle.io.proto.Io.StoredSequence other) {
        if (other == bio.pih.genoogle.io.proto.Io.StoredSequence.getDefaultInstance()) return this;
        if (other.hasId()) {
          setId(other.getId());
        }
        if (other.hasType()) {
          bitField0_ |= 0x00000002;
          type_ = other.type_;
          onChanged();
        }
        if (other.hasGi()) {
          bitField0_ |= 0x00000004;
          gi_ = other.gi_;
          onChanged();
        }
        if (other.hasName()) {
          bitField0_ |= 0x00000008;
          name_ = other.name_;
          onChanged();
        }
        if (other.hasAccession()) {
          bitField0_ |= 0x00000010;
          accession_ = other.accession_;
          onChanged();
        }
        if (other.hasDescription()) {
          bitField0_ |= 0x00000020;
          description_ = other.description_;
          onChanged();
        }
        if (other.hasEncodedSequence()) {
          setEncodedSequence(other.getEncodedSequence());
        }
        this.mergeUnknownFields(other.getUnknownFields());
        return this;
      }

      public final boolean isInitialized() {
        if (!hasId()) {
          
          return false;
        }
        if (!hasType()) {
          
          return false;
        }
        if (!hasGi()) {
          
          return false;
        }
        if (!hasName()) {
          
          return false;
        }
        if (!hasAccession()) {
          
          return false;
        }
        if (!hasDescription()) {
          
          return false;
        }
        if (!hasEncodedSequence()) {
          
          return false;
        }
        return true;
      }

      public Builder mergeFrom(
          com.google.protobuf.CodedInputStream input,
          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
          throws java.io.IOException {
        bio.pih.genoogle.io.proto.Io.StoredSequence parsedMessage = null;
        try {
          parsedMessage = PARSER.parsePartialFrom(input, extensionRegistry);
        } catch (com.google.protobuf.InvalidProtocolBufferException e) {
          parsedMessage = (bio.pih.genoogle.io.proto.Io.StoredSequence) e.getUnfinishedMessage();
          throw e;
        } finally {
          if (parsedMessage != null) {
            mergeFrom(parsedMessage);
          }
        }
        return this;
      }
      private int bitField0_;

      private int id_ ;
      /**
       * <code>required int32 id = 1;</code>
       */
      public boolean hasId() {
        return ((bitField0_ & 0x00000001) == 0x00000001);
      }
      /**
       * <code>required int32 id = 1;</code>
       */
      public int getId() {
        return id_;
      }
      /**
       * <code>required int32 id = 1;</code>
       */
      public Builder setId(int value) {
        bitField0_ |= 0x00000001;
        id_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required int32 id = 1;</code>
       */
      public Builder clearId() {
        bitField0_ = (bitField0_ & ~0x00000001);
        id_ = 0;
        onChanged();
        return this;
      }

      private java.lang.Object type_ = "";
      /**
       * <code>required string type = 2;</code>
       */
      public boolean hasType() {
        return ((bitField0_ & 0x00000002) == 0x00000002);
      }
      /**
       * <code>required string type = 2;</code>
       */
      public java.lang.String getType() {
        java.lang.Object ref = type_;
        if (!(ref instanceof java.lang.String)) {
          com.google.protobuf.ByteString bs =
              (com.google.protobuf.ByteString) ref;
          java.lang.String s = bs.toStringUtf8();
          if (bs.isValidUtf8()) {
            type_ = s;
          }
          return s;
        } else {
          return (java.lang.String) ref;
        }
      }
      /**
       * <code>required string type = 2;</code>
       */
      public com.google.protobuf.ByteString
          getTypeBytes() {
        java.lang.Object ref = type_;
        if (ref instanceof String) {
          com.google.protobuf.ByteString b = 
              com.google.protobuf.ByteString.copyFromUtf8(
                  (java.lang.String) ref);
          type_ = b;
          return b;
        } else {
          return (com.google.protobuf.ByteString) ref;
        }
      }
      /**
       * <code>required string type = 2;</code>
       */
      public Builder setType(
          java.lang.String value) {
        if (value == null) {
    throw new NullPointerException();
  }
  bitField0_ |= 0x00000002;
        type_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required string type = 2;</code>
       */
      public Builder clearType() {
        bitField0_ = (bitField0_ & ~0x00000002);
        type_ = getDefaultInstance().getType();
        onChanged();
        return this;
      }
      /**
       * <code>required string type = 2;</code>
       */
      public Builder setTypeBytes(
          com.google.protobuf.ByteString value) {
        if (value == null) {
    throw new NullPointerException();
  }
  bitField0_ |= 0x00000002;
        type_ = value;
        onChanged();
        return this;
      }

      private java.lang.Object gi_ = "";
      /**
       * <code>required string gi = 3;</code>
       */
      public boolean hasGi() {
        return ((bitField0_ & 0x00000004) == 0x00000004);
      }
      /**
       * <code>required string gi = 3;</code>
       */
      public java.lang.String getGi() {
        java.lang.Object ref = gi_;
        if (!(ref instanceof java.lang.String)) {
          com.google.protobuf.ByteString bs =
              (com.google.protobuf.ByteString) ref;
          java.lang.String s = bs.toStringUtf8();
          if (bs.isValidUtf8()) {
            gi_ = s;
          }
          return s;
        } else {
          return (java.lang.String) ref;
        }
      }
      /**
       * <code>required string gi = 3;</code>
       */
      public com.google.protobuf.ByteString
          getGiBytes() {
        java.lang.Object ref = gi_;
        if (ref instanceof String) {
          com.google.protobuf.ByteString b = 
              com.google.protobuf.ByteString.copyFromUtf8(
                  (java.lang.String) ref);
          gi_ = b;
          return b;
        } else {
          return (com.google.protobuf.ByteString) ref;
        }
      }
      /**
       * <code>required string gi = 3;</code>
       */
      public Builder setGi(
          java.lang.String value) {
        if (value == null) {
    throw new NullPointerException();
  }
  bitField0_ |= 0x00000004;
        gi_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required string gi = 3;</code>
       */
      public Builder clearGi() {
        bitField0_ = (bitField0_ & ~0x00000004);
        gi_ = getDefaultInstance().getGi();
        onChanged();
        return this;
      }
      /**
       * <code>required string gi = 3;</code>
       */
      public Builder setGiBytes(
          com.google.protobuf.ByteString value) {
        if (value == null) {
    throw new NullPointerException();
  }
  bitField0_ |= 0x00000004;
        gi_ = value;
        onChanged();
        return this;
      }

      private java.lang.Object name_ = "";
      /**
       * <code>required string name = 4;</code>
       */
      public boolean hasName() {
        return ((bitField0_ & 0x00000008) == 0x00000008);
      }
      /**
       * <code>required string name = 4;</code>
       */
      public java.lang.String getName() {
        java.lang.Object ref = name_;
        if (!(ref instanceof java.lang.String)) {
          com.google.protobuf.ByteString bs =
              (com.google.protobuf.ByteString) ref;
          java.lang.String s = bs.toStringUtf8();
          if (bs.isValidUtf8()) {
            name_ = s;
          }
          return s;
        } else {
          return (java.lang.String) ref;
        }
      }
      /**
       * <code>required string name = 4;</code>
       */
      public com.google.protobuf.ByteString
          getNameBytes() {
        java.lang.Object ref = name_;
        if (ref instanceof String) {
          com.google.protobuf.ByteString b = 
              com.google.protobuf.ByteString.copyFromUtf8(
                  (java.lang.String) ref);
          name_ = b;
          return b;
        } else {
          return (com.google.protobuf.ByteString) ref;
        }
      }
      /**
       * <code>required string name = 4;</code>
       */
      public Builder setName(
          java.lang.String value) {
        if (value == null) {
    throw new NullPointerException();
  }
  bitField0_ |= 0x00000008;
        name_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required string name = 4;</code>
       */
      public Builder clearName() {
        bitField0_ = (bitField0_ & ~0x00000008);
        name_ = getDefaultInstance().getName();
        onChanged();
        return this;
      }
      /**
       * <code>required string name = 4;</code>
       */
      public Builder setNameBytes(
          com.google.protobuf.ByteString value) {
        if (value == null) {
    throw new NullPointerException();
  }
  bitField0_ |= 0x00000008;
        name_ = value;
        onChanged();
        return this;
      }

      private java.lang.Object accession_ = "";
      /**
       * <code>required string accession = 5;</code>
       */
      public boolean hasAccession() {
        return ((bitField0_ & 0x00000010) == 0x00000010);
      }
      /**
       * <code>required string accession = 5;</code>
       */
      public java.lang.String getAccession() {
        java.lang.Object ref = accession_;
        if (!(ref instanceof java.lang.String)) {
          com.google.protobuf.ByteString bs =
              (com.google.protobuf.ByteString) ref;
          java.lang.String s = bs.toStringUtf8();
          if (bs.isValidUtf8()) {
            accession_ = s;
          }
          return s;
        } else {
          return (java.lang.String) ref;
        }
      }
      /**
       * <code>required string accession = 5;</code>
       */
      public com.google.protobuf.ByteString
          getAccessionBytes() {
        java.lang.Object ref = accession_;
        if (ref instanceof String) {
          com.google.protobuf.ByteString b = 
              com.google.protobuf.ByteString.copyFromUtf8(
                  (java.lang.String) ref);
          accession_ = b;
          return b;
        } else {
          return (com.google.protobuf.ByteString) ref;
        }
      }
      /**
       * <code>required string accession = 5;</code>
       */
      public Builder setAccession(
          java.lang.String value) {
        if (value == null) {
    throw new NullPointerException();
  }
  bitField0_ |= 0x00000010;
        accession_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required string accession = 5;</code>
       */
      public Builder clearAccession() {
        bitField0_ = (bitField0_ & ~0x00000010);
        accession_ = getDefaultInstance().getAccession();
        onChanged();
        return this;
      }
      /**
       * <code>required string accession = 5;</code>
       */
      public Builder setAccessionBytes(
          com.google.protobuf.ByteString value) {
        if (value == null) {
    throw new NullPointerException();
  }
  bitField0_ |= 0x00000010;
        accession_ = value;
        onChanged();
        return this;
      }

      private java.lang.Object description_ = "";
      /**
       * <code>required string description = 6;</code>
       */
      public boolean hasDescription() {
        return ((bitField0_ & 0x00000020) == 0x00000020);
      }
      /**
       * <code>required string description = 6;</code>
       */
      public java.lang.String getDescription() {
        java.lang.Object ref = description_;
        if (!(ref instanceof java.lang.String)) {
          com.google.protobuf.ByteString bs =
              (com.google.protobuf.ByteString) ref;
          java.lang.String s = bs.toStringUtf8();
          if (bs.isValidUtf8()) {
            description_ = s;
          }
          return s;
        } else {
          return (java.lang.String) ref;
        }
      }
      /**
       * <code>required string description = 6;</code>
       */
      public com.google.protobuf.ByteString
          getDescriptionBytes() {
        java.lang.Object ref = description_;
        if (ref instanceof String) {
          com.google.protobuf.ByteString b = 
              com.google.protobuf.ByteString.copyFromUtf8(
                  (java.lang.String) ref);
          description_ = b;
          return b;
        } else {
          return (com.google.protobuf.ByteString) ref;
        }
      }
      /**
       * <code>required string description = 6;</code>
       */
      public Builder setDescription(
          java.lang.String value) {
        if (value == null) {
    throw new NullPointerException();
  }
  bitField0_ |= 0x00000020;
        description_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required string description = 6;</code>
       */
      public Builder clearDescription() {
        bitField0_ = (bitField0_ & ~0x00000020);
        description_ = getDefaultInstance().getDescription();
        onChanged();
        return this;
      }
      /**
       * <code>required string description = 6;</code>
       */
      public Builder setDescriptionBytes(
          com.google.protobuf.ByteString value) {
        if (value == null) {
    throw new NullPointerException();
  }
  bitField0_ |= 0x00000020;
        description_ = value;
        onChanged();
        return this;
      }

      private com.google.protobuf.ByteString encodedSequence_ = com.google.protobuf.ByteString.EMPTY;
      /**
       * <code>required bytes encodedSequence = 7;</code>
       */
      public boolean hasEncodedSequence() {
        return ((bitField0_ & 0x00000040) == 0x00000040);
      }
      /**
       * <code>required bytes encodedSequence = 7;</code>
       */
      public com.google.protobuf.ByteString getEncodedSequence() {
        return encodedSequence_;
      }
      /**
       * <code>required bytes encodedSequence = 7;</code>
       */
      public Builder setEncodedSequence(com.google.protobuf.ByteString value) {
        if (value == null) {
    throw new NullPointerException();
  }
  bitField0_ |= 0x00000040;
        encodedSequence_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required bytes encodedSequence = 7;</code>
       */
      public Builder clearEncodedSequence() {
        bitField0_ = (bitField0_ & ~0x00000040);
        encodedSequence_ = getDefaultInstance().getEncodedSequence();
        onChanged();
        return this;
      }

      // @@protoc_insertion_point(builder_scope:proto.StoredSequence)
    }

    static {
      defaultInstance = new StoredSequence(true);
      defaultInstance.initFields();
    }

    // @@protoc_insertion_point(class_scope:proto.StoredSequence)
  }

  public interface StoredSimilarSubSequencesIndexOrBuilder extends
      // @@protoc_insertion_point(interface_extends:proto.StoredSimilarSubSequencesIndex)
      com.google.protobuf.MessageOrBuilder {

    /**
     * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
     *
     * <pre>
     * TODO: put params here
     * </pre>
     */
    java.util.List<bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo> 
        getStoredComparationResultInfosList();
    /**
     * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
     *
     * <pre>
     * TODO: put params here
     * </pre>
     */
    bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo getStoredComparationResultInfos(int index);
    /**
     * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
     *
     * <pre>
     * TODO: put params here
     * </pre>
     */
    int getStoredComparationResultInfosCount();
    /**
     * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
     *
     * <pre>
     * TODO: put params here
     * </pre>
     */
    java.util.List<? extends bio.pih.genoogle.io.proto.Io.StoredComparationResultInfoOrBuilder> 
        getStoredComparationResultInfosOrBuilderList();
    /**
     * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
     *
     * <pre>
     * TODO: put params here
     * </pre>
     */
    bio.pih.genoogle.io.proto.Io.StoredComparationResultInfoOrBuilder getStoredComparationResultInfosOrBuilder(
        int index);
  }
  /**
   * Protobuf type {@code proto.StoredSimilarSubSequencesIndex}
   *
   * <pre>
   *///////////////////////////////////////////////////////////////////
   * Similar SubSequences stuffs
   * ///////////////////////////////////////////////////////////////////
   * </pre>
   */
  public static final class StoredSimilarSubSequencesIndex extends
      com.google.protobuf.GeneratedMessage implements
      // @@protoc_insertion_point(message_implements:proto.StoredSimilarSubSequencesIndex)
      StoredSimilarSubSequencesIndexOrBuilder {
    // Use StoredSimilarSubSequencesIndex.newBuilder() to construct.
    private StoredSimilarSubSequencesIndex(com.google.protobuf.GeneratedMessage.Builder<?> builder) {
      super(builder);
      this.unknownFields = builder.getUnknownFields();
    }
    private StoredSimilarSubSequencesIndex(boolean noInit) { this.unknownFields = com.google.protobuf.UnknownFieldSet.getDefaultInstance(); }

    private static final StoredSimilarSubSequencesIndex defaultInstance;
    public static StoredSimilarSubSequencesIndex getDefaultInstance() {
      return defaultInstance;
    }

    public StoredSimilarSubSequencesIndex getDefaultInstanceForType() {
      return defaultInstance;
    }

    private final com.google.protobuf.UnknownFieldSet unknownFields;
    @java.lang.Override
    public final com.google.protobuf.UnknownFieldSet
        getUnknownFields() {
      return this.unknownFields;
    }
    private StoredSimilarSubSequencesIndex(
        com.google.protobuf.CodedInputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      initFields();
      int mutable_bitField0_ = 0;
      com.google.protobuf.UnknownFieldSet.Builder unknownFields =
          com.google.protobuf.UnknownFieldSet.newBuilder();
      try {
        boolean done = false;
        while (!done) {
          int tag = input.readTag();
          switch (tag) {
            case 0:
              done = true;
              break;
            default: {
              if (!parseUnknownField(input, unknownFields,
                                     extensionRegistry, tag)) {
                done = true;
              }
              break;
            }
            case 10: {
              if (!((mutable_bitField0_ & 0x00000001) == 0x00000001)) {
                storedComparationResultInfos_ = new java.util.ArrayList<bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo>();
                mutable_bitField0_ |= 0x00000001;
              }
              storedComparationResultInfos_.add(input.readMessage(bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.PARSER, extensionRegistry));
              break;
            }
          }
        }
      } catch (com.google.protobuf.InvalidProtocolBufferException e) {
        throw e.setUnfinishedMessage(this);
      } catch (java.io.IOException e) {
        throw new com.google.protobuf.InvalidProtocolBufferException(
            e.getMessage()).setUnfinishedMessage(this);
      } finally {
        if (((mutable_bitField0_ & 0x00000001) == 0x00000001)) {
          storedComparationResultInfos_ = java.util.Collections.unmodifiableList(storedComparationResultInfos_);
        }
        this.unknownFields = unknownFields.build();
        makeExtensionsImmutable();
      }
    }
    public static final com.google.protobuf.Descriptors.Descriptor
        getDescriptor() {
      return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSimilarSubSequencesIndex_descriptor;
    }

    protected com.google.protobuf.GeneratedMessage.FieldAccessorTable
        internalGetFieldAccessorTable() {
      return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSimilarSubSequencesIndex_fieldAccessorTable
          .ensureFieldAccessorsInitialized(
              bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex.class, bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex.Builder.class);
    }

    public static com.google.protobuf.Parser<StoredSimilarSubSequencesIndex> PARSER =
        new com.google.protobuf.AbstractParser<StoredSimilarSubSequencesIndex>() {
      public StoredSimilarSubSequencesIndex parsePartialFrom(
          com.google.protobuf.CodedInputStream input,
          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
          throws com.google.protobuf.InvalidProtocolBufferException {
        return new StoredSimilarSubSequencesIndex(input, extensionRegistry);
      }
    };

    @java.lang.Override
    public com.google.protobuf.Parser<StoredSimilarSubSequencesIndex> getParserForType() {
      return PARSER;
    }

    public static final int STOREDCOMPARATIONRESULTINFOS_FIELD_NUMBER = 1;
    private java.util.List<bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo> storedComparationResultInfos_;
    /**
     * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
     *
     * <pre>
     * TODO: put params here
     * </pre>
     */
    public java.util.List<bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo> getStoredComparationResultInfosList() {
      return storedComparationResultInfos_;
    }
    /**
     * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
     *
     * <pre>
     * TODO: put params here
     * </pre>
     */
    public java.util.List<? extends bio.pih.genoogle.io.proto.Io.StoredComparationResultInfoOrBuilder> 
        getStoredComparationResultInfosOrBuilderList() {
      return storedComparationResultInfos_;
    }
    /**
     * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
     *
     * <pre>
     * TODO: put params here
     * </pre>
     */
    public int getStoredComparationResultInfosCount() {
      return storedComparationResultInfos_.size();
    }
    /**
     * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
     *
     * <pre>
     * TODO: put params here
     * </pre>
     */
    public bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo getStoredComparationResultInfos(int index) {
      return storedComparationResultInfos_.get(index);
    }
    /**
     * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
     *
     * <pre>
     * TODO: put params here
     * </pre>
     */
    public bio.pih.genoogle.io.proto.Io.StoredComparationResultInfoOrBuilder getStoredComparationResultInfosOrBuilder(
        int index) {
      return storedComparationResultInfos_.get(index);
    }

    private void initFields() {
      storedComparationResultInfos_ = java.util.Collections.emptyList();
    }
    private byte memoizedIsInitialized = -1;
    public final boolean isInitialized() {
      byte isInitialized = memoizedIsInitialized;
      if (isInitialized == 1) return true;
      if (isInitialized == 0) return false;

      for (int i = 0; i < getStoredComparationResultInfosCount(); i++) {
        if (!getStoredComparationResultInfos(i).isInitialized()) {
          memoizedIsInitialized = 0;
          return false;
        }
      }
      memoizedIsInitialized = 1;
      return true;
    }

    public void writeTo(com.google.protobuf.CodedOutputStream output)
                        throws java.io.IOException {
      getSerializedSize();
      for (int i = 0; i < storedComparationResultInfos_.size(); i++) {
        output.writeMessage(1, storedComparationResultInfos_.get(i));
      }
      getUnknownFields().writeTo(output);
    }

    private int memoizedSerializedSize = -1;
    public int getSerializedSize() {
      int size = memoizedSerializedSize;
      if (size != -1) return size;

      size = 0;
      for (int i = 0; i < storedComparationResultInfos_.size(); i++) {
        size += com.google.protobuf.CodedOutputStream
          .computeMessageSize(1, storedComparationResultInfos_.get(i));
      }
      size += getUnknownFields().getSerializedSize();
      memoizedSerializedSize = size;
      return size;
    }

    private static final long serialVersionUID = 0L;
    @java.lang.Override
    protected java.lang.Object writeReplace()
        throws java.io.ObjectStreamException {
      return super.writeReplace();
    }

    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex parseFrom(
        com.google.protobuf.ByteString data)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex parseFrom(
        com.google.protobuf.ByteString data,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex parseFrom(byte[] data)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex parseFrom(
        byte[] data,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex parseFrom(java.io.InputStream input)
        throws java.io.IOException {
      return PARSER.parseFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex parseFrom(
        java.io.InputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseFrom(input, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex parseDelimitedFrom(java.io.InputStream input)
        throws java.io.IOException {
      return PARSER.parseDelimitedFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex parseDelimitedFrom(
        java.io.InputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseDelimitedFrom(input, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex parseFrom(
        com.google.protobuf.CodedInputStream input)
        throws java.io.IOException {
      return PARSER.parseFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex parseFrom(
        com.google.protobuf.CodedInputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseFrom(input, extensionRegistry);
    }

    public static Builder newBuilder() { return Builder.create(); }
    public Builder newBuilderForType() { return newBuilder(); }
    public static Builder newBuilder(bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex prototype) {
      return newBuilder().mergeFrom(prototype);
    }
    public Builder toBuilder() { return newBuilder(this); }

    @java.lang.Override
    protected Builder newBuilderForType(
        com.google.protobuf.GeneratedMessage.BuilderParent parent) {
      Builder builder = new Builder(parent);
      return builder;
    }
    /**
     * Protobuf type {@code proto.StoredSimilarSubSequencesIndex}
     *
     * <pre>
     *///////////////////////////////////////////////////////////////////
     * Similar SubSequences stuffs
     * ///////////////////////////////////////////////////////////////////
     * </pre>
     */
    public static final class Builder extends
        com.google.protobuf.GeneratedMessage.Builder<Builder> implements
        // @@protoc_insertion_point(builder_implements:proto.StoredSimilarSubSequencesIndex)
        bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndexOrBuilder {
      public static final com.google.protobuf.Descriptors.Descriptor
          getDescriptor() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSimilarSubSequencesIndex_descriptor;
      }

      protected com.google.protobuf.GeneratedMessage.FieldAccessorTable
          internalGetFieldAccessorTable() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSimilarSubSequencesIndex_fieldAccessorTable
            .ensureFieldAccessorsInitialized(
                bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex.class, bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex.Builder.class);
      }

      // Construct using bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex.newBuilder()
      private Builder() {
        maybeForceBuilderInitialization();
      }

      private Builder(
          com.google.protobuf.GeneratedMessage.BuilderParent parent) {
        super(parent);
        maybeForceBuilderInitialization();
      }
      private void maybeForceBuilderInitialization() {
        if (com.google.protobuf.GeneratedMessage.alwaysUseFieldBuilders) {
          getStoredComparationResultInfosFieldBuilder();
        }
      }
      private static Builder create() {
        return new Builder();
      }

      public Builder clear() {
        super.clear();
        if (storedComparationResultInfosBuilder_ == null) {
          storedComparationResultInfos_ = java.util.Collections.emptyList();
          bitField0_ = (bitField0_ & ~0x00000001);
        } else {
          storedComparationResultInfosBuilder_.clear();
        }
        return this;
      }

      public Builder clone() {
        return create().mergeFrom(buildPartial());
      }

      public com.google.protobuf.Descriptors.Descriptor
          getDescriptorForType() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSimilarSubSequencesIndex_descriptor;
      }

      public bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex getDefaultInstanceForType() {
        return bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex.getDefaultInstance();
      }

      public bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex build() {
        bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex result = buildPartial();
        if (!result.isInitialized()) {
          throw newUninitializedMessageException(result);
        }
        return result;
      }

      public bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex buildPartial() {
        bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex result = new bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex(this);
        int from_bitField0_ = bitField0_;
        if (storedComparationResultInfosBuilder_ == null) {
          if (((bitField0_ & 0x00000001) == 0x00000001)) {
            storedComparationResultInfos_ = java.util.Collections.unmodifiableList(storedComparationResultInfos_);
            bitField0_ = (bitField0_ & ~0x00000001);
          }
          result.storedComparationResultInfos_ = storedComparationResultInfos_;
        } else {
          result.storedComparationResultInfos_ = storedComparationResultInfosBuilder_.build();
        }
        onBuilt();
        return result;
      }

      public Builder mergeFrom(com.google.protobuf.Message other) {
        if (other instanceof bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex) {
          return mergeFrom((bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex)other);
        } else {
          super.mergeFrom(other);
          return this;
        }
      }

      public Builder mergeFrom(bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex other) {
        if (other == bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex.getDefaultInstance()) return this;
        if (storedComparationResultInfosBuilder_ == null) {
          if (!other.storedComparationResultInfos_.isEmpty()) {
            if (storedComparationResultInfos_.isEmpty()) {
              storedComparationResultInfos_ = other.storedComparationResultInfos_;
              bitField0_ = (bitField0_ & ~0x00000001);
            } else {
              ensureStoredComparationResultInfosIsMutable();
              storedComparationResultInfos_.addAll(other.storedComparationResultInfos_);
            }
            onChanged();
          }
        } else {
          if (!other.storedComparationResultInfos_.isEmpty()) {
            if (storedComparationResultInfosBuilder_.isEmpty()) {
              storedComparationResultInfosBuilder_.dispose();
              storedComparationResultInfosBuilder_ = null;
              storedComparationResultInfos_ = other.storedComparationResultInfos_;
              bitField0_ = (bitField0_ & ~0x00000001);
              storedComparationResultInfosBuilder_ = 
                com.google.protobuf.GeneratedMessage.alwaysUseFieldBuilders ?
                   getStoredComparationResultInfosFieldBuilder() : null;
            } else {
              storedComparationResultInfosBuilder_.addAllMessages(other.storedComparationResultInfos_);
            }
          }
        }
        this.mergeUnknownFields(other.getUnknownFields());
        return this;
      }

      public final boolean isInitialized() {
        for (int i = 0; i < getStoredComparationResultInfosCount(); i++) {
          if (!getStoredComparationResultInfos(i).isInitialized()) {
            
            return false;
          }
        }
        return true;
      }

      public Builder mergeFrom(
          com.google.protobuf.CodedInputStream input,
          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
          throws java.io.IOException {
        bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex parsedMessage = null;
        try {
          parsedMessage = PARSER.parsePartialFrom(input, extensionRegistry);
        } catch (com.google.protobuf.InvalidProtocolBufferException e) {
          parsedMessage = (bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesIndex) e.getUnfinishedMessage();
          throw e;
        } finally {
          if (parsedMessage != null) {
            mergeFrom(parsedMessage);
          }
        }
        return this;
      }
      private int bitField0_;

      private java.util.List<bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo> storedComparationResultInfos_ =
        java.util.Collections.emptyList();
      private void ensureStoredComparationResultInfosIsMutable() {
        if (!((bitField0_ & 0x00000001) == 0x00000001)) {
          storedComparationResultInfos_ = new java.util.ArrayList<bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo>(storedComparationResultInfos_);
          bitField0_ |= 0x00000001;
         }
      }

      private com.google.protobuf.RepeatedFieldBuilder<
          bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo, bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.Builder, bio.pih.genoogle.io.proto.Io.StoredComparationResultInfoOrBuilder> storedComparationResultInfosBuilder_;

      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public java.util.List<bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo> getStoredComparationResultInfosList() {
        if (storedComparationResultInfosBuilder_ == null) {
          return java.util.Collections.unmodifiableList(storedComparationResultInfos_);
        } else {
          return storedComparationResultInfosBuilder_.getMessageList();
        }
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public int getStoredComparationResultInfosCount() {
        if (storedComparationResultInfosBuilder_ == null) {
          return storedComparationResultInfos_.size();
        } else {
          return storedComparationResultInfosBuilder_.getCount();
        }
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo getStoredComparationResultInfos(int index) {
        if (storedComparationResultInfosBuilder_ == null) {
          return storedComparationResultInfos_.get(index);
        } else {
          return storedComparationResultInfosBuilder_.getMessage(index);
        }
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public Builder setStoredComparationResultInfos(
          int index, bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo value) {
        if (storedComparationResultInfosBuilder_ == null) {
          if (value == null) {
            throw new NullPointerException();
          }
          ensureStoredComparationResultInfosIsMutable();
          storedComparationResultInfos_.set(index, value);
          onChanged();
        } else {
          storedComparationResultInfosBuilder_.setMessage(index, value);
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public Builder setStoredComparationResultInfos(
          int index, bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.Builder builderForValue) {
        if (storedComparationResultInfosBuilder_ == null) {
          ensureStoredComparationResultInfosIsMutable();
          storedComparationResultInfos_.set(index, builderForValue.build());
          onChanged();
        } else {
          storedComparationResultInfosBuilder_.setMessage(index, builderForValue.build());
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public Builder addStoredComparationResultInfos(bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo value) {
        if (storedComparationResultInfosBuilder_ == null) {
          if (value == null) {
            throw new NullPointerException();
          }
          ensureStoredComparationResultInfosIsMutable();
          storedComparationResultInfos_.add(value);
          onChanged();
        } else {
          storedComparationResultInfosBuilder_.addMessage(value);
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public Builder addStoredComparationResultInfos(
          int index, bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo value) {
        if (storedComparationResultInfosBuilder_ == null) {
          if (value == null) {
            throw new NullPointerException();
          }
          ensureStoredComparationResultInfosIsMutable();
          storedComparationResultInfos_.add(index, value);
          onChanged();
        } else {
          storedComparationResultInfosBuilder_.addMessage(index, value);
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public Builder addStoredComparationResultInfos(
          bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.Builder builderForValue) {
        if (storedComparationResultInfosBuilder_ == null) {
          ensureStoredComparationResultInfosIsMutable();
          storedComparationResultInfos_.add(builderForValue.build());
          onChanged();
        } else {
          storedComparationResultInfosBuilder_.addMessage(builderForValue.build());
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public Builder addStoredComparationResultInfos(
          int index, bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.Builder builderForValue) {
        if (storedComparationResultInfosBuilder_ == null) {
          ensureStoredComparationResultInfosIsMutable();
          storedComparationResultInfos_.add(index, builderForValue.build());
          onChanged();
        } else {
          storedComparationResultInfosBuilder_.addMessage(index, builderForValue.build());
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public Builder addAllStoredComparationResultInfos(
          java.lang.Iterable<? extends bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo> values) {
        if (storedComparationResultInfosBuilder_ == null) {
          ensureStoredComparationResultInfosIsMutable();
          com.google.protobuf.AbstractMessageLite.Builder.addAll(
              values, storedComparationResultInfos_);
          onChanged();
        } else {
          storedComparationResultInfosBuilder_.addAllMessages(values);
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public Builder clearStoredComparationResultInfos() {
        if (storedComparationResultInfosBuilder_ == null) {
          storedComparationResultInfos_ = java.util.Collections.emptyList();
          bitField0_ = (bitField0_ & ~0x00000001);
          onChanged();
        } else {
          storedComparationResultInfosBuilder_.clear();
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public Builder removeStoredComparationResultInfos(int index) {
        if (storedComparationResultInfosBuilder_ == null) {
          ensureStoredComparationResultInfosIsMutable();
          storedComparationResultInfos_.remove(index);
          onChanged();
        } else {
          storedComparationResultInfosBuilder_.remove(index);
        }
        return this;
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.Builder getStoredComparationResultInfosBuilder(
          int index) {
        return getStoredComparationResultInfosFieldBuilder().getBuilder(index);
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public bio.pih.genoogle.io.proto.Io.StoredComparationResultInfoOrBuilder getStoredComparationResultInfosOrBuilder(
          int index) {
        if (storedComparationResultInfosBuilder_ == null) {
          return storedComparationResultInfos_.get(index);  } else {
          return storedComparationResultInfosBuilder_.getMessageOrBuilder(index);
        }
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public java.util.List<? extends bio.pih.genoogle.io.proto.Io.StoredComparationResultInfoOrBuilder> 
           getStoredComparationResultInfosOrBuilderList() {
        if (storedComparationResultInfosBuilder_ != null) {
          return storedComparationResultInfosBuilder_.getMessageOrBuilderList();
        } else {
          return java.util.Collections.unmodifiableList(storedComparationResultInfos_);
        }
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.Builder addStoredComparationResultInfosBuilder() {
        return getStoredComparationResultInfosFieldBuilder().addBuilder(
            bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.getDefaultInstance());
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.Builder addStoredComparationResultInfosBuilder(
          int index) {
        return getStoredComparationResultInfosFieldBuilder().addBuilder(
            index, bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.getDefaultInstance());
      }
      /**
       * <code>repeated .proto.StoredComparationResultInfo storedComparationResultInfos = 1;</code>
       *
       * <pre>
       * TODO: put params here
       * </pre>
       */
      public java.util.List<bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.Builder> 
           getStoredComparationResultInfosBuilderList() {
        return getStoredComparationResultInfosFieldBuilder().getBuilderList();
      }
      private com.google.protobuf.RepeatedFieldBuilder<
          bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo, bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.Builder, bio.pih.genoogle.io.proto.Io.StoredComparationResultInfoOrBuilder> 
          getStoredComparationResultInfosFieldBuilder() {
        if (storedComparationResultInfosBuilder_ == null) {
          storedComparationResultInfosBuilder_ = new com.google.protobuf.RepeatedFieldBuilder<
              bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo, bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.Builder, bio.pih.genoogle.io.proto.Io.StoredComparationResultInfoOrBuilder>(
                  storedComparationResultInfos_,
                  ((bitField0_ & 0x00000001) == 0x00000001),
                  getParentForChildren(),
                  isClean());
          storedComparationResultInfos_ = null;
        }
        return storedComparationResultInfosBuilder_;
      }

      // @@protoc_insertion_point(builder_scope:proto.StoredSimilarSubSequencesIndex)
    }

    static {
      defaultInstance = new StoredSimilarSubSequencesIndex(true);
      defaultInstance.initFields();
    }

    // @@protoc_insertion_point(class_scope:proto.StoredSimilarSubSequencesIndex)
  }

  public interface StoredComparationResultInfoOrBuilder extends
      // @@protoc_insertion_point(interface_extends:proto.StoredComparationResultInfo)
      com.google.protobuf.MessageOrBuilder {

    /**
     * <code>required int32 encodedSubSequence = 1;</code>
     */
    boolean hasEncodedSubSequence();
    /**
     * <code>required int32 encodedSubSequence = 1;</code>
     */
    int getEncodedSubSequence();

    /**
     * <code>required int32 length = 3;</code>
     */
    boolean hasLength();
    /**
     * <code>required int32 length = 3;</code>
     */
    int getLength();

    /**
     * <code>required int64 offset = 2;</code>
     */
    boolean hasOffset();
    /**
     * <code>required int64 offset = 2;</code>
     */
    long getOffset();
  }
  /**
   * Protobuf type {@code proto.StoredComparationResultInfo}
   */
  public static final class StoredComparationResultInfo extends
      com.google.protobuf.GeneratedMessage implements
      // @@protoc_insertion_point(message_implements:proto.StoredComparationResultInfo)
      StoredComparationResultInfoOrBuilder {
    // Use StoredComparationResultInfo.newBuilder() to construct.
    private StoredComparationResultInfo(com.google.protobuf.GeneratedMessage.Builder<?> builder) {
      super(builder);
      this.unknownFields = builder.getUnknownFields();
    }
    private StoredComparationResultInfo(boolean noInit) { this.unknownFields = com.google.protobuf.UnknownFieldSet.getDefaultInstance(); }

    private static final StoredComparationResultInfo defaultInstance;
    public static StoredComparationResultInfo getDefaultInstance() {
      return defaultInstance;
    }

    public StoredComparationResultInfo getDefaultInstanceForType() {
      return defaultInstance;
    }

    private final com.google.protobuf.UnknownFieldSet unknownFields;
    @java.lang.Override
    public final com.google.protobuf.UnknownFieldSet
        getUnknownFields() {
      return this.unknownFields;
    }
    private StoredComparationResultInfo(
        com.google.protobuf.CodedInputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      initFields();
      int mutable_bitField0_ = 0;
      com.google.protobuf.UnknownFieldSet.Builder unknownFields =
          com.google.protobuf.UnknownFieldSet.newBuilder();
      try {
        boolean done = false;
        while (!done) {
          int tag = input.readTag();
          switch (tag) {
            case 0:
              done = true;
              break;
            default: {
              if (!parseUnknownField(input, unknownFields,
                                     extensionRegistry, tag)) {
                done = true;
              }
              break;
            }
            case 8: {
              bitField0_ |= 0x00000001;
              encodedSubSequence_ = input.readInt32();
              break;
            }
            case 16: {
              bitField0_ |= 0x00000004;
              offset_ = input.readInt64();
              break;
            }
            case 24: {
              bitField0_ |= 0x00000002;
              length_ = input.readInt32();
              break;
            }
          }
        }
      } catch (com.google.protobuf.InvalidProtocolBufferException e) {
        throw e.setUnfinishedMessage(this);
      } catch (java.io.IOException e) {
        throw new com.google.protobuf.InvalidProtocolBufferException(
            e.getMessage()).setUnfinishedMessage(this);
      } finally {
        this.unknownFields = unknownFields.build();
        makeExtensionsImmutable();
      }
    }
    public static final com.google.protobuf.Descriptors.Descriptor
        getDescriptor() {
      return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredComparationResultInfo_descriptor;
    }

    protected com.google.protobuf.GeneratedMessage.FieldAccessorTable
        internalGetFieldAccessorTable() {
      return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredComparationResultInfo_fieldAccessorTable
          .ensureFieldAccessorsInitialized(
              bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.class, bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.Builder.class);
    }

    public static com.google.protobuf.Parser<StoredComparationResultInfo> PARSER =
        new com.google.protobuf.AbstractParser<StoredComparationResultInfo>() {
      public StoredComparationResultInfo parsePartialFrom(
          com.google.protobuf.CodedInputStream input,
          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
          throws com.google.protobuf.InvalidProtocolBufferException {
        return new StoredComparationResultInfo(input, extensionRegistry);
      }
    };

    @java.lang.Override
    public com.google.protobuf.Parser<StoredComparationResultInfo> getParserForType() {
      return PARSER;
    }

    private int bitField0_;
    public static final int ENCODEDSUBSEQUENCE_FIELD_NUMBER = 1;
    private int encodedSubSequence_;
    /**
     * <code>required int32 encodedSubSequence = 1;</code>
     */
    public boolean hasEncodedSubSequence() {
      return ((bitField0_ & 0x00000001) == 0x00000001);
    }
    /**
     * <code>required int32 encodedSubSequence = 1;</code>
     */
    public int getEncodedSubSequence() {
      return encodedSubSequence_;
    }

    public static final int LENGTH_FIELD_NUMBER = 3;
    private int length_;
    /**
     * <code>required int32 length = 3;</code>
     */
    public boolean hasLength() {
      return ((bitField0_ & 0x00000002) == 0x00000002);
    }
    /**
     * <code>required int32 length = 3;</code>
     */
    public int getLength() {
      return length_;
    }

    public static final int OFFSET_FIELD_NUMBER = 2;
    private long offset_;
    /**
     * <code>required int64 offset = 2;</code>
     */
    public boolean hasOffset() {
      return ((bitField0_ & 0x00000004) == 0x00000004);
    }
    /**
     * <code>required int64 offset = 2;</code>
     */
    public long getOffset() {
      return offset_;
    }

    private void initFields() {
      encodedSubSequence_ = 0;
      length_ = 0;
      offset_ = 0L;
    }
    private byte memoizedIsInitialized = -1;
    public final boolean isInitialized() {
      byte isInitialized = memoizedIsInitialized;
      if (isInitialized == 1) return true;
      if (isInitialized == 0) return false;

      if (!hasEncodedSubSequence()) {
        memoizedIsInitialized = 0;
        return false;
      }
      if (!hasLength()) {
        memoizedIsInitialized = 0;
        return false;
      }
      if (!hasOffset()) {
        memoizedIsInitialized = 0;
        return false;
      }
      memoizedIsInitialized = 1;
      return true;
    }

    public void writeTo(com.google.protobuf.CodedOutputStream output)
                        throws java.io.IOException {
      getSerializedSize();
      if (((bitField0_ & 0x00000001) == 0x00000001)) {
        output.writeInt32(1, encodedSubSequence_);
      }
      if (((bitField0_ & 0x00000004) == 0x00000004)) {
        output.writeInt64(2, offset_);
      }
      if (((bitField0_ & 0x00000002) == 0x00000002)) {
        output.writeInt32(3, length_);
      }
      getUnknownFields().writeTo(output);
    }

    private int memoizedSerializedSize = -1;
    public int getSerializedSize() {
      int size = memoizedSerializedSize;
      if (size != -1) return size;

      size = 0;
      if (((bitField0_ & 0x00000001) == 0x00000001)) {
        size += com.google.protobuf.CodedOutputStream
          .computeInt32Size(1, encodedSubSequence_);
      }
      if (((bitField0_ & 0x00000004) == 0x00000004)) {
        size += com.google.protobuf.CodedOutputStream
          .computeInt64Size(2, offset_);
      }
      if (((bitField0_ & 0x00000002) == 0x00000002)) {
        size += com.google.protobuf.CodedOutputStream
          .computeInt32Size(3, length_);
      }
      size += getUnknownFields().getSerializedSize();
      memoizedSerializedSize = size;
      return size;
    }

    private static final long serialVersionUID = 0L;
    @java.lang.Override
    protected java.lang.Object writeReplace()
        throws java.io.ObjectStreamException {
      return super.writeReplace();
    }

    public static bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo parseFrom(
        com.google.protobuf.ByteString data)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo parseFrom(
        com.google.protobuf.ByteString data,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo parseFrom(byte[] data)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo parseFrom(
        byte[] data,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo parseFrom(java.io.InputStream input)
        throws java.io.IOException {
      return PARSER.parseFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo parseFrom(
        java.io.InputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseFrom(input, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo parseDelimitedFrom(java.io.InputStream input)
        throws java.io.IOException {
      return PARSER.parseDelimitedFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo parseDelimitedFrom(
        java.io.InputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseDelimitedFrom(input, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo parseFrom(
        com.google.protobuf.CodedInputStream input)
        throws java.io.IOException {
      return PARSER.parseFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo parseFrom(
        com.google.protobuf.CodedInputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseFrom(input, extensionRegistry);
    }

    public static Builder newBuilder() { return Builder.create(); }
    public Builder newBuilderForType() { return newBuilder(); }
    public static Builder newBuilder(bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo prototype) {
      return newBuilder().mergeFrom(prototype);
    }
    public Builder toBuilder() { return newBuilder(this); }

    @java.lang.Override
    protected Builder newBuilderForType(
        com.google.protobuf.GeneratedMessage.BuilderParent parent) {
      Builder builder = new Builder(parent);
      return builder;
    }
    /**
     * Protobuf type {@code proto.StoredComparationResultInfo}
     */
    public static final class Builder extends
        com.google.protobuf.GeneratedMessage.Builder<Builder> implements
        // @@protoc_insertion_point(builder_implements:proto.StoredComparationResultInfo)
        bio.pih.genoogle.io.proto.Io.StoredComparationResultInfoOrBuilder {
      public static final com.google.protobuf.Descriptors.Descriptor
          getDescriptor() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredComparationResultInfo_descriptor;
      }

      protected com.google.protobuf.GeneratedMessage.FieldAccessorTable
          internalGetFieldAccessorTable() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredComparationResultInfo_fieldAccessorTable
            .ensureFieldAccessorsInitialized(
                bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.class, bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.Builder.class);
      }

      // Construct using bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.newBuilder()
      private Builder() {
        maybeForceBuilderInitialization();
      }

      private Builder(
          com.google.protobuf.GeneratedMessage.BuilderParent parent) {
        super(parent);
        maybeForceBuilderInitialization();
      }
      private void maybeForceBuilderInitialization() {
        if (com.google.protobuf.GeneratedMessage.alwaysUseFieldBuilders) {
        }
      }
      private static Builder create() {
        return new Builder();
      }

      public Builder clear() {
        super.clear();
        encodedSubSequence_ = 0;
        bitField0_ = (bitField0_ & ~0x00000001);
        length_ = 0;
        bitField0_ = (bitField0_ & ~0x00000002);
        offset_ = 0L;
        bitField0_ = (bitField0_ & ~0x00000004);
        return this;
      }

      public Builder clone() {
        return create().mergeFrom(buildPartial());
      }

      public com.google.protobuf.Descriptors.Descriptor
          getDescriptorForType() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredComparationResultInfo_descriptor;
      }

      public bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo getDefaultInstanceForType() {
        return bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.getDefaultInstance();
      }

      public bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo build() {
        bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo result = buildPartial();
        if (!result.isInitialized()) {
          throw newUninitializedMessageException(result);
        }
        return result;
      }

      public bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo buildPartial() {
        bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo result = new bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo(this);
        int from_bitField0_ = bitField0_;
        int to_bitField0_ = 0;
        if (((from_bitField0_ & 0x00000001) == 0x00000001)) {
          to_bitField0_ |= 0x00000001;
        }
        result.encodedSubSequence_ = encodedSubSequence_;
        if (((from_bitField0_ & 0x00000002) == 0x00000002)) {
          to_bitField0_ |= 0x00000002;
        }
        result.length_ = length_;
        if (((from_bitField0_ & 0x00000004) == 0x00000004)) {
          to_bitField0_ |= 0x00000004;
        }
        result.offset_ = offset_;
        result.bitField0_ = to_bitField0_;
        onBuilt();
        return result;
      }

      public Builder mergeFrom(com.google.protobuf.Message other) {
        if (other instanceof bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo) {
          return mergeFrom((bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo)other);
        } else {
          super.mergeFrom(other);
          return this;
        }
      }

      public Builder mergeFrom(bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo other) {
        if (other == bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo.getDefaultInstance()) return this;
        if (other.hasEncodedSubSequence()) {
          setEncodedSubSequence(other.getEncodedSubSequence());
        }
        if (other.hasLength()) {
          setLength(other.getLength());
        }
        if (other.hasOffset()) {
          setOffset(other.getOffset());
        }
        this.mergeUnknownFields(other.getUnknownFields());
        return this;
      }

      public final boolean isInitialized() {
        if (!hasEncodedSubSequence()) {
          
          return false;
        }
        if (!hasLength()) {
          
          return false;
        }
        if (!hasOffset()) {
          
          return false;
        }
        return true;
      }

      public Builder mergeFrom(
          com.google.protobuf.CodedInputStream input,
          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
          throws java.io.IOException {
        bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo parsedMessage = null;
        try {
          parsedMessage = PARSER.parsePartialFrom(input, extensionRegistry);
        } catch (com.google.protobuf.InvalidProtocolBufferException e) {
          parsedMessage = (bio.pih.genoogle.io.proto.Io.StoredComparationResultInfo) e.getUnfinishedMessage();
          throw e;
        } finally {
          if (parsedMessage != null) {
            mergeFrom(parsedMessage);
          }
        }
        return this;
      }
      private int bitField0_;

      private int encodedSubSequence_ ;
      /**
       * <code>required int32 encodedSubSequence = 1;</code>
       */
      public boolean hasEncodedSubSequence() {
        return ((bitField0_ & 0x00000001) == 0x00000001);
      }
      /**
       * <code>required int32 encodedSubSequence = 1;</code>
       */
      public int getEncodedSubSequence() {
        return encodedSubSequence_;
      }
      /**
       * <code>required int32 encodedSubSequence = 1;</code>
       */
      public Builder setEncodedSubSequence(int value) {
        bitField0_ |= 0x00000001;
        encodedSubSequence_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required int32 encodedSubSequence = 1;</code>
       */
      public Builder clearEncodedSubSequence() {
        bitField0_ = (bitField0_ & ~0x00000001);
        encodedSubSequence_ = 0;
        onChanged();
        return this;
      }

      private int length_ ;
      /**
       * <code>required int32 length = 3;</code>
       */
      public boolean hasLength() {
        return ((bitField0_ & 0x00000002) == 0x00000002);
      }
      /**
       * <code>required int32 length = 3;</code>
       */
      public int getLength() {
        return length_;
      }
      /**
       * <code>required int32 length = 3;</code>
       */
      public Builder setLength(int value) {
        bitField0_ |= 0x00000002;
        length_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required int32 length = 3;</code>
       */
      public Builder clearLength() {
        bitField0_ = (bitField0_ & ~0x00000002);
        length_ = 0;
        onChanged();
        return this;
      }

      private long offset_ ;
      /**
       * <code>required int64 offset = 2;</code>
       */
      public boolean hasOffset() {
        return ((bitField0_ & 0x00000004) == 0x00000004);
      }
      /**
       * <code>required int64 offset = 2;</code>
       */
      public long getOffset() {
        return offset_;
      }
      /**
       * <code>required int64 offset = 2;</code>
       */
      public Builder setOffset(long value) {
        bitField0_ |= 0x00000004;
        offset_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required int64 offset = 2;</code>
       */
      public Builder clearOffset() {
        bitField0_ = (bitField0_ & ~0x00000004);
        offset_ = 0L;
        onChanged();
        return this;
      }

      // @@protoc_insertion_point(builder_scope:proto.StoredComparationResultInfo)
    }

    static {
      defaultInstance = new StoredComparationResultInfo(true);
      defaultInstance.initFields();
    }

    // @@protoc_insertion_point(class_scope:proto.StoredComparationResultInfo)
  }

  public interface StoredSimilarSubSequencesOrBuilder extends
      // @@protoc_insertion_point(interface_extends:proto.StoredSimilarSubSequences)
      com.google.protobuf.MessageOrBuilder {

    /**
     * <code>required int32 encodedSequence = 1;</code>
     */
    boolean hasEncodedSequence();
    /**
     * <code>required int32 encodedSequence = 1;</code>
     */
    int getEncodedSequence();

    /**
     * <code>repeated int32 similarSequence = 2;</code>
     */
    java.util.List<java.lang.Integer> getSimilarSequenceList();
    /**
     * <code>repeated int32 similarSequence = 2;</code>
     */
    int getSimilarSequenceCount();
    /**
     * <code>repeated int32 similarSequence = 2;</code>
     */
    int getSimilarSequence(int index);
  }
  /**
   * Protobuf type {@code proto.StoredSimilarSubSequences}
   */
  public static final class StoredSimilarSubSequences extends
      com.google.protobuf.GeneratedMessage implements
      // @@protoc_insertion_point(message_implements:proto.StoredSimilarSubSequences)
      StoredSimilarSubSequencesOrBuilder {
    // Use StoredSimilarSubSequences.newBuilder() to construct.
    private StoredSimilarSubSequences(com.google.protobuf.GeneratedMessage.Builder<?> builder) {
      super(builder);
      this.unknownFields = builder.getUnknownFields();
    }
    private StoredSimilarSubSequences(boolean noInit) { this.unknownFields = com.google.protobuf.UnknownFieldSet.getDefaultInstance(); }

    private static final StoredSimilarSubSequences defaultInstance;
    public static StoredSimilarSubSequences getDefaultInstance() {
      return defaultInstance;
    }

    public StoredSimilarSubSequences getDefaultInstanceForType() {
      return defaultInstance;
    }

    private final com.google.protobuf.UnknownFieldSet unknownFields;
    @java.lang.Override
    public final com.google.protobuf.UnknownFieldSet
        getUnknownFields() {
      return this.unknownFields;
    }
    private StoredSimilarSubSequences(
        com.google.protobuf.CodedInputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      initFields();
      int mutable_bitField0_ = 0;
      com.google.protobuf.UnknownFieldSet.Builder unknownFields =
          com.google.protobuf.UnknownFieldSet.newBuilder();
      try {
        boolean done = false;
        while (!done) {
          int tag = input.readTag();
          switch (tag) {
            case 0:
              done = true;
              break;
            default: {
              if (!parseUnknownField(input, unknownFields,
                                     extensionRegistry, tag)) {
                done = true;
              }
              break;
            }
            case 8: {
              bitField0_ |= 0x00000001;
              encodedSequence_ = input.readInt32();
              break;
            }
            case 16: {
              if (!((mutable_bitField0_ & 0x00000002) == 0x00000002)) {
                similarSequence_ = new java.util.ArrayList<java.lang.Integer>();
                mutable_bitField0_ |= 0x00000002;
              }
              similarSequence_.add(input.readInt32());
              break;
            }
            case 18: {
              int length = input.readRawVarint32();
              int limit = input.pushLimit(length);
              if (!((mutable_bitField0_ & 0x00000002) == 0x00000002) && input.getBytesUntilLimit() > 0) {
                similarSequence_ = new java.util.ArrayList<java.lang.Integer>();
                mutable_bitField0_ |= 0x00000002;
              }
              while (input.getBytesUntilLimit() > 0) {
                similarSequence_.add(input.readInt32());
              }
              input.popLimit(limit);
              break;
            }
          }
        }
      } catch (com.google.protobuf.InvalidProtocolBufferException e) {
        throw e.setUnfinishedMessage(this);
      } catch (java.io.IOException e) {
        throw new com.google.protobuf.InvalidProtocolBufferException(
            e.getMessage()).setUnfinishedMessage(this);
      } finally {
        if (((mutable_bitField0_ & 0x00000002) == 0x00000002)) {
          similarSequence_ = java.util.Collections.unmodifiableList(similarSequence_);
        }
        this.unknownFields = unknownFields.build();
        makeExtensionsImmutable();
      }
    }
    public static final com.google.protobuf.Descriptors.Descriptor
        getDescriptor() {
      return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSimilarSubSequences_descriptor;
    }

    protected com.google.protobuf.GeneratedMessage.FieldAccessorTable
        internalGetFieldAccessorTable() {
      return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSimilarSubSequences_fieldAccessorTable
          .ensureFieldAccessorsInitialized(
              bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences.class, bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences.Builder.class);
    }

    public static com.google.protobuf.Parser<StoredSimilarSubSequences> PARSER =
        new com.google.protobuf.AbstractParser<StoredSimilarSubSequences>() {
      public StoredSimilarSubSequences parsePartialFrom(
          com.google.protobuf.CodedInputStream input,
          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
          throws com.google.protobuf.InvalidProtocolBufferException {
        return new StoredSimilarSubSequences(input, extensionRegistry);
      }
    };

    @java.lang.Override
    public com.google.protobuf.Parser<StoredSimilarSubSequences> getParserForType() {
      return PARSER;
    }

    private int bitField0_;
    public static final int ENCODEDSEQUENCE_FIELD_NUMBER = 1;
    private int encodedSequence_;
    /**
     * <code>required int32 encodedSequence = 1;</code>
     */
    public boolean hasEncodedSequence() {
      return ((bitField0_ & 0x00000001) == 0x00000001);
    }
    /**
     * <code>required int32 encodedSequence = 1;</code>
     */
    public int getEncodedSequence() {
      return encodedSequence_;
    }

    public static final int SIMILARSEQUENCE_FIELD_NUMBER = 2;
    private java.util.List<java.lang.Integer> similarSequence_;
    /**
     * <code>repeated int32 similarSequence = 2;</code>
     */
    public java.util.List<java.lang.Integer>
        getSimilarSequenceList() {
      return similarSequence_;
    }
    /**
     * <code>repeated int32 similarSequence = 2;</code>
     */
    public int getSimilarSequenceCount() {
      return similarSequence_.size();
    }
    /**
     * <code>repeated int32 similarSequence = 2;</code>
     */
    public int getSimilarSequence(int index) {
      return similarSequence_.get(index);
    }

    private void initFields() {
      encodedSequence_ = 0;
      similarSequence_ = java.util.Collections.emptyList();
    }
    private byte memoizedIsInitialized = -1;
    public final boolean isInitialized() {
      byte isInitialized = memoizedIsInitialized;
      if (isInitialized == 1) return true;
      if (isInitialized == 0) return false;

      if (!hasEncodedSequence()) {
        memoizedIsInitialized = 0;
        return false;
      }
      memoizedIsInitialized = 1;
      return true;
    }

    public void writeTo(com.google.protobuf.CodedOutputStream output)
                        throws java.io.IOException {
      getSerializedSize();
      if (((bitField0_ & 0x00000001) == 0x00000001)) {
        output.writeInt32(1, encodedSequence_);
      }
      for (int i = 0; i < similarSequence_.size(); i++) {
        output.writeInt32(2, similarSequence_.get(i));
      }
      getUnknownFields().writeTo(output);
    }

    private int memoizedSerializedSize = -1;
    public int getSerializedSize() {
      int size = memoizedSerializedSize;
      if (size != -1) return size;

      size = 0;
      if (((bitField0_ & 0x00000001) == 0x00000001)) {
        size += com.google.protobuf.CodedOutputStream
          .computeInt32Size(1, encodedSequence_);
      }
      {
        int dataSize = 0;
        for (int i = 0; i < similarSequence_.size(); i++) {
          dataSize += com.google.protobuf.CodedOutputStream
            .computeInt32SizeNoTag(similarSequence_.get(i));
        }
        size += dataSize;
        size += 1 * getSimilarSequenceList().size();
      }
      size += getUnknownFields().getSerializedSize();
      memoizedSerializedSize = size;
      return size;
    }

    private static final long serialVersionUID = 0L;
    @java.lang.Override
    protected java.lang.Object writeReplace()
        throws java.io.ObjectStreamException {
      return super.writeReplace();
    }

    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences parseFrom(
        com.google.protobuf.ByteString data)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences parseFrom(
        com.google.protobuf.ByteString data,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences parseFrom(byte[] data)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences parseFrom(
        byte[] data,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws com.google.protobuf.InvalidProtocolBufferException {
      return PARSER.parseFrom(data, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences parseFrom(java.io.InputStream input)
        throws java.io.IOException {
      return PARSER.parseFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences parseFrom(
        java.io.InputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseFrom(input, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences parseDelimitedFrom(java.io.InputStream input)
        throws java.io.IOException {
      return PARSER.parseDelimitedFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences parseDelimitedFrom(
        java.io.InputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseDelimitedFrom(input, extensionRegistry);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences parseFrom(
        com.google.protobuf.CodedInputStream input)
        throws java.io.IOException {
      return PARSER.parseFrom(input);
    }
    public static bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences parseFrom(
        com.google.protobuf.CodedInputStream input,
        com.google.protobuf.ExtensionRegistryLite extensionRegistry)
        throws java.io.IOException {
      return PARSER.parseFrom(input, extensionRegistry);
    }

    public static Builder newBuilder() { return Builder.create(); }
    public Builder newBuilderForType() { return newBuilder(); }
    public static Builder newBuilder(bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences prototype) {
      return newBuilder().mergeFrom(prototype);
    }
    public Builder toBuilder() { return newBuilder(this); }

    @java.lang.Override
    protected Builder newBuilderForType(
        com.google.protobuf.GeneratedMessage.BuilderParent parent) {
      Builder builder = new Builder(parent);
      return builder;
    }
    /**
     * Protobuf type {@code proto.StoredSimilarSubSequences}
     */
    public static final class Builder extends
        com.google.protobuf.GeneratedMessage.Builder<Builder> implements
        // @@protoc_insertion_point(builder_implements:proto.StoredSimilarSubSequences)
        bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequencesOrBuilder {
      public static final com.google.protobuf.Descriptors.Descriptor
          getDescriptor() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSimilarSubSequences_descriptor;
      }

      protected com.google.protobuf.GeneratedMessage.FieldAccessorTable
          internalGetFieldAccessorTable() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSimilarSubSequences_fieldAccessorTable
            .ensureFieldAccessorsInitialized(
                bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences.class, bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences.Builder.class);
      }

      // Construct using bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences.newBuilder()
      private Builder() {
        maybeForceBuilderInitialization();
      }

      private Builder(
          com.google.protobuf.GeneratedMessage.BuilderParent parent) {
        super(parent);
        maybeForceBuilderInitialization();
      }
      private void maybeForceBuilderInitialization() {
        if (com.google.protobuf.GeneratedMessage.alwaysUseFieldBuilders) {
        }
      }
      private static Builder create() {
        return new Builder();
      }

      public Builder clear() {
        super.clear();
        encodedSequence_ = 0;
        bitField0_ = (bitField0_ & ~0x00000001);
        similarSequence_ = java.util.Collections.emptyList();
        bitField0_ = (bitField0_ & ~0x00000002);
        return this;
      }

      public Builder clone() {
        return create().mergeFrom(buildPartial());
      }

      public com.google.protobuf.Descriptors.Descriptor
          getDescriptorForType() {
        return bio.pih.genoogle.io.proto.Io.internal_static_proto_StoredSimilarSubSequences_descriptor;
      }

      public bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences getDefaultInstanceForType() {
        return bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences.getDefaultInstance();
      }

      public bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences build() {
        bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences result = buildPartial();
        if (!result.isInitialized()) {
          throw newUninitializedMessageException(result);
        }
        return result;
      }

      public bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences buildPartial() {
        bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences result = new bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences(this);
        int from_bitField0_ = bitField0_;
        int to_bitField0_ = 0;
        if (((from_bitField0_ & 0x00000001) == 0x00000001)) {
          to_bitField0_ |= 0x00000001;
        }
        result.encodedSequence_ = encodedSequence_;
        if (((bitField0_ & 0x00000002) == 0x00000002)) {
          similarSequence_ = java.util.Collections.unmodifiableList(similarSequence_);
          bitField0_ = (bitField0_ & ~0x00000002);
        }
        result.similarSequence_ = similarSequence_;
        result.bitField0_ = to_bitField0_;
        onBuilt();
        return result;
      }

      public Builder mergeFrom(com.google.protobuf.Message other) {
        if (other instanceof bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences) {
          return mergeFrom((bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences)other);
        } else {
          super.mergeFrom(other);
          return this;
        }
      }

      public Builder mergeFrom(bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences other) {
        if (other == bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences.getDefaultInstance()) return this;
        if (other.hasEncodedSequence()) {
          setEncodedSequence(other.getEncodedSequence());
        }
        if (!other.similarSequence_.isEmpty()) {
          if (similarSequence_.isEmpty()) {
            similarSequence_ = other.similarSequence_;
            bitField0_ = (bitField0_ & ~0x00000002);
          } else {
            ensureSimilarSequenceIsMutable();
            similarSequence_.addAll(other.similarSequence_);
          }
          onChanged();
        }
        this.mergeUnknownFields(other.getUnknownFields());
        return this;
      }

      public final boolean isInitialized() {
        if (!hasEncodedSequence()) {
          
          return false;
        }
        return true;
      }

      public Builder mergeFrom(
          com.google.protobuf.CodedInputStream input,
          com.google.protobuf.ExtensionRegistryLite extensionRegistry)
          throws java.io.IOException {
        bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences parsedMessage = null;
        try {
          parsedMessage = PARSER.parsePartialFrom(input, extensionRegistry);
        } catch (com.google.protobuf.InvalidProtocolBufferException e) {
          parsedMessage = (bio.pih.genoogle.io.proto.Io.StoredSimilarSubSequences) e.getUnfinishedMessage();
          throw e;
        } finally {
          if (parsedMessage != null) {
            mergeFrom(parsedMessage);
          }
        }
        return this;
      }
      private int bitField0_;

      private int encodedSequence_ ;
      /**
       * <code>required int32 encodedSequence = 1;</code>
       */
      public boolean hasEncodedSequence() {
        return ((bitField0_ & 0x00000001) == 0x00000001);
      }
      /**
       * <code>required int32 encodedSequence = 1;</code>
       */
      public int getEncodedSequence() {
        return encodedSequence_;
      }
      /**
       * <code>required int32 encodedSequence = 1;</code>
       */
      public Builder setEncodedSequence(int value) {
        bitField0_ |= 0x00000001;
        encodedSequence_ = value;
        onChanged();
        return this;
      }
      /**
       * <code>required int32 encodedSequence = 1;</code>
       */
      public Builder clearEncodedSequence() {
        bitField0_ = (bitField0_ & ~0x00000001);
        encodedSequence_ = 0;
        onChanged();
        return this;
      }

      private java.util.List<java.lang.Integer> similarSequence_ = java.util.Collections.emptyList();
      private void ensureSimilarSequenceIsMutable() {
        if (!((bitField0_ & 0x00000002) == 0x00000002)) {
          similarSequence_ = new java.util.ArrayList<java.lang.Integer>(similarSequence_);
          bitField0_ |= 0x00000002;
         }
      }
      /**
       * <code>repeated int32 similarSequence = 2;</code>
       */
      public java.util.List<java.lang.Integer>
          getSimilarSequenceList() {
        return java.util.Collections.unmodifiableList(similarSequence_);
      }
      /**
       * <code>repeated int32 similarSequence = 2;</code>
       */
      public int getSimilarSequenceCount() {
        return similarSequence_.size();
      }
      /**
       * <code>repeated int32 similarSequence = 2;</code>
       */
      public int getSimilarSequence(int index) {
        return similarSequence_.get(index);
      }
      /**
       * <code>repeated int32 similarSequence = 2;</code>
       */
      public Builder setSimilarSequence(
          int index, int value) {
        ensureSimilarSequenceIsMutable();
        similarSequence_.set(index, value);
        onChanged();
        return this;
      }
      /**
       * <code>repeated int32 similarSequence = 2;</code>
       */
      public Builder addSimilarSequence(int value) {
        ensureSimilarSequenceIsMutable();
        similarSequence_.add(value);
        onChanged();
        return this;
      }
      /**
       * <code>repeated int32 similarSequence = 2;</code>
       */
      public Builder addAllSimilarSequence(
          java.lang.Iterable<? extends java.lang.Integer> values) {
        ensureSimilarSequenceIsMutable();
        com.google.protobuf.AbstractMessageLite.Builder.addAll(
            values, similarSequence_);
        onChanged();
        return this;
      }
      /**
       * <code>repeated int32 similarSequence = 2;</code>
       */
      public Builder clearSimilarSequence() {
        similarSequence_ = java.util.Collections.emptyList();
        bitField0_ = (bitField0_ & ~0x00000002);
        onChanged();
        return this;
      }

      // @@protoc_insertion_point(builder_scope:proto.StoredSimilarSubSequences)
    }

    static {
      defaultInstance = new StoredSimilarSubSequences(true);
      defaultInstance.initFields();
    }

    // @@protoc_insertion_point(class_scope:proto.StoredSimilarSubSequences)
  }

  private static final com.google.protobuf.Descriptors.Descriptor
    internal_static_proto_InvertedIndexBuck_descriptor;
  private static
    com.google.protobuf.GeneratedMessage.FieldAccessorTable
      internal_static_proto_InvertedIndexBuck_fieldAccessorTable;
  private static final com.google.protobuf.Descriptors.Descriptor
    internal_static_proto_StoredDatabank_descriptor;
  private static
    com.google.protobuf.GeneratedMessage.FieldAccessorTable
      internal_static_proto_StoredDatabank_fieldAccessorTable;
  private static final com.google.protobuf.Descriptors.Descriptor
    internal_static_proto_StoredSequenceInfo_descriptor;
  private static
    com.google.protobuf.GeneratedMessage.FieldAccessorTable
      internal_static_proto_StoredSequenceInfo_fieldAccessorTable;
  private static final com.google.protobuf.Descriptors.Descriptor
    internal_static_proto_StoredSequence_descriptor;
  private static
    com.google.protobuf.GeneratedMessage.FieldAccessorTable
      internal_static_proto_StoredSequence_fieldAccessorTable;
  private static final com.google.protobuf.Descriptors.Descriptor
    internal_static_proto_StoredSimilarSubSequencesIndex_descriptor;
  private static
    com.google.protobuf.GeneratedMessage.FieldAccessorTable
      internal_static_proto_StoredSimilarSubSequencesIndex_fieldAccessorTable;
  private static final com.google.protobuf.Descriptors.Descriptor
    internal_static_proto_StoredComparationResultInfo_descriptor;
  private static
    com.google.protobuf.GeneratedMessage.FieldAccessorTable
      internal_static_proto_StoredComparationResultInfo_fieldAccessorTable;
  private static final com.google.protobuf.Descriptors.Descriptor
    internal_static_proto_StoredSimilarSubSequences_descriptor;
  private static
    com.google.protobuf.GeneratedMessage.FieldAccessorTable
      internal_static_proto_StoredSimilarSubSequences_fieldAccessorTable;

  public static com.google.protobuf.Descriptors.FileDescriptor
      getDescriptor() {
    return descriptor;
  }
  private static com.google.protobuf.Descriptors.FileDescriptor
      descriptor;
  static {
    java.lang.String[] descriptorData = {
      "\n\016proto/io.proto\022\005proto\"!\n\021InvertedIndex" +
      "Buck\022\014\n\004buck\030\001 \003(\003\"\251\002\n\016StoredDatabank\0220\n" +
      "\004type\030\001 \002(\0162\".proto.StoredDatabank.Seque" +
      "nceType\022\031\n\021subSequenceLength\030\002 \002(\005\022\014\n\004ma" +
      "sk\030\003 \001(\t\022\033\n\023lowComplexityFilter\030\004 \001(\005\022\024\n" +
      "\014qtdSequences\030\005 \002(\005\022\020\n\010qtdBases\030\006 \002(\003\0220\n" +
      "\rsequencesInfo\030\007 \003(\0132\031.proto.StoredSeque" +
      "nceInfo\"E\n\014SequenceType\022\007\n\003DNA\020\000\022\007\n\003RNA\020" +
      "\001\022\013\n\007PROTEIN\020\002\022\026\n\022TRANSLATED_PROTEIN\020\003\"@" +
      "\n\022StoredSequenceInfo\022\n\n\002id\030\001 \002(\005\022\016\n\006offs",
      "et\030\002 \002(\003\022\016\n\006length\030\003 \002(\005\"\205\001\n\016StoredSeque" +
      "nce\022\n\n\002id\030\001 \002(\005\022\014\n\004type\030\002 \002(\t\022\n\n\002gi\030\003 \002(" +
      "\t\022\014\n\004name\030\004 \002(\t\022\021\n\taccession\030\005 \002(\t\022\023\n\013de" +
      "scription\030\006 \002(\t\022\027\n\017encodedSequence\030\007 \002(\014" +
      "\"j\n\036StoredSimilarSubSequencesIndex\022H\n\034st" +
      "oredComparationResultInfos\030\001 \003(\0132\".proto" +
      ".StoredComparationResultInfo\"Y\n\033StoredCo" +
      "mparationResultInfo\022\032\n\022encodedSubSequenc" +
      "e\030\001 \002(\005\022\016\n\006length\030\003 \002(\005\022\016\n\006offset\030\002 \002(\003\"" +
      "M\n\031StoredSimilarSubSequences\022\027\n\017encodedS",
      "equence\030\001 \002(\005\022\027\n\017similarSequence\030\002 \003(\005B!" +
      "\n\031bio.pih.genoogle.io.protoB\002IoH\001"
    };
    com.google.protobuf.Descriptors.FileDescriptor.InternalDescriptorAssigner assigner =
        new com.google.protobuf.Descriptors.FileDescriptor.    InternalDescriptorAssigner() {
          public com.google.protobuf.ExtensionRegistry assignDescriptors(
              com.google.protobuf.Descriptors.FileDescriptor root) {
            descriptor = root;
            return null;
          }
        };
    com.google.protobuf.Descriptors.FileDescriptor
      .internalBuildGeneratedFileFrom(descriptorData,
        new com.google.protobuf.Descriptors.FileDescriptor[] {
        }, assigner);
    internal_static_proto_InvertedIndexBuck_descriptor =
      getDescriptor().getMessageTypes().get(0);
    internal_static_proto_InvertedIndexBuck_fieldAccessorTable = new
      com.google.protobuf.GeneratedMessage.FieldAccessorTable(
        internal_static_proto_InvertedIndexBuck_descriptor,
        new java.lang.String[] { "Buck", });
    internal_static_proto_StoredDatabank_descriptor =
      getDescriptor().getMessageTypes().get(1);
    internal_static_proto_StoredDatabank_fieldAccessorTable = new
      com.google.protobuf.GeneratedMessage.FieldAccessorTable(
        internal_static_proto_StoredDatabank_descriptor,
        new java.lang.String[] { "Type", "SubSequenceLength", "Mask", "LowComplexityFilter", "QtdSequences", "QtdBases", "SequencesInfo", });
    internal_static_proto_StoredSequenceInfo_descriptor =
      getDescriptor().getMessageTypes().get(2);
    internal_static_proto_StoredSequenceInfo_fieldAccessorTable = new
      com.google.protobuf.GeneratedMessage.FieldAccessorTable(
        internal_static_proto_StoredSequenceInfo_descriptor,
        new java.lang.String[] { "Id", "Offset", "Length", });
    internal_static_proto_StoredSequence_descriptor =
      getDescriptor().getMessageTypes().get(3);
    internal_static_proto_StoredSequence_fieldAccessorTable = new
      com.google.protobuf.GeneratedMessage.FieldAccessorTable(
        internal_static_proto_StoredSequence_descriptor,
        new java.lang.String[] { "Id", "Type", "Gi", "Name", "Accession", "Description", "EncodedSequence", });
    internal_static_proto_StoredSimilarSubSequencesIndex_descriptor =
      getDescriptor().getMessageTypes().get(4);
    internal_static_proto_StoredSimilarSubSequencesIndex_fieldAccessorTable = new
      com.google.protobuf.GeneratedMessage.FieldAccessorTable(
        internal_static_proto_StoredSimilarSubSequencesIndex_descriptor,
        new java.lang.String[] { "StoredComparationResultInfos", });
    internal_static_proto_StoredComparationResultInfo_descriptor =
      getDescriptor().getMessageTypes().get(5);
    internal_static_proto_StoredComparationResultInfo_fieldAccessorTable = new
      com.google.protobuf.GeneratedMessage.FieldAccessorTable(
        internal_static_proto_StoredComparationResultInfo_descriptor,
        new java.lang.String[] { "EncodedSubSequence", "Length", "Offset", });
    internal_static_proto_StoredSimilarSubSequences_descriptor =
      getDescriptor().getMessageTypes().get(6);
    internal_static_proto_StoredSimilarSubSequences_fieldAccessorTable = new
      com.google.protobuf.GeneratedMessage.FieldAccessorTable(
        internal_static_proto_StoredSimilarSubSequences_descriptor,
        new java.lang.String[] { "EncodedSequence", "SimilarSequence", });
  }

  // @@protoc_insertion_point(outer_class_scope)
}