//============================================================================= // Copyright 2006-2010 Daniel W. Dyer // // Licensed under the Apache License, Version 2.0 (the "License"); // you may not use this file except in compliance with the License. // You may obtain a copy of the License at // // http://www.apache.org/licenses/LICENSE-2.0 // // Unless required by applicable law or agreed to in writing, software // distributed under the License is distributed on an "AS IS" BASIS, // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. // See the License for the specific language governing permissions and // limitations under the License. //============================================================================= package org.uncommons.watchmaker.examples.biomorphs; import java.util.ArrayList; import java.util.HashSet; import java.util.List; import java.util.Set; import org.testng.annotations.Test; import org.uncommons.watchmaker.examples.ExamplesTestUtils; import org.uncommons.watchmaker.framework.EvolutionaryOperator; /** * Unit test for non-random mutation used by Biomorph example application. * @author Daniel Dyer */ public class DawkinsBiomorphMutationTest { /** * Ensure that each possible mutation occurs exactly once. */ @Test public void testMutations() { Biomorph source = new Biomorph(new int[]{-5, -4, -3, -2, -1, 0, 1, 2, 8}); List<Biomorph> originalPopulation = new ArrayList<Biomorph>(18); for (int i = 0; i < 18; i++) { originalPopulation.add(source); } EvolutionaryOperator<Biomorph> mutation = new DawkinsBiomorphMutation(); List<Biomorph> mutatedPopulation = mutation.apply(originalPopulation, ExamplesTestUtils.getRNG()); // RNG should be ignored. assert mutatedPopulation.size() == originalPopulation.size() : "Mutated population is wrong size."; // Lazy way of checking for duplicates. Add all mutations to a set. If there are any // duplicates, the size of the set will be shorter than the list. Set<Biomorph> distinctBiomorphs = new HashSet<Biomorph>(mutatedPopulation); assert distinctBiomorphs.size() == mutatedPopulation.size() : "Mutated population contains duplicates."; // Check for each of the expected mutations (mutations should differ from the original in only one gene). assert distinctBiomorphs.contains(new Biomorph(new int[]{5, -4, -3, -2, -1, 0, 1, 2, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-4, -4, -3, -2, -1, 0, 1, 2, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -5, -3, -2, -1, 0, 1, 2, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -3, -3, -2, -1, 0, 1, 2, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -4, -4, -2, -1, 0, 1, 2, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -4, -2, -2, -1, 0, 1, 2, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -4, -3, -3, -1, 0, 1, 2, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -4, -3, -1, -1, 0, 1, 2, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -4, -3, -2, -2, 0, 1, 2, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -4, -3, -2, 0, 0, 1, 2, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -4, -3, -2, -1, -1, 1, 2, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -4, -3, -2, -1, 1, 1, 2, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -4, -3, -2, -1, 0, 0, 2, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -4, -3, -2, -1, 0, 2, 2, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -4, -3, -2, -1, 0, 1, 1, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -4, -3, -2, -1, 0, 1, 3, 8})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -4, -3, -2, -1, 0, 1, 2, 7})) : "Missing mutation."; assert distinctBiomorphs.contains(new Biomorph(new int[]{-5, -4, -3, -2, -1, 0, 1, 2, 1})) : "Missing mutation."; } }