DefaultAlignmentDBAdaptorTest.java

package org.opencb.opencga.storage.core.alignment.adaptors;

/**
 * Created by pfurio on 26/10/16.
 */
public class DefaultAlignmentDBAdaptorTest {

//    @Test
//    public void iterator() throws Exception {
//        String inputPath = getClass().getResource("/HG00096.chrom20.small.bam").getPath();
//        AlignmentStorageEngine defaultAlignmentStorageManager =
//                new AlignmentStorageEngine(null, null, new StorageConfiguration(), Paths.get("/tmp"));
//        AlignmentIterator iterator = defaultAlignmentStorageManager.getDBAdaptor().iterator(inputPath);
//        while (iterator.hasNext()) {
//            System.out.println(iterator.next().toString());
//        }
//    }

}