/*
* Copyright 2015-2016 OpenCB
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.opencb.opencga.client.rest.catalog;
import org.opencb.commons.datastore.core.ObjectMap;
import org.opencb.commons.datastore.core.QueryResponse;
import org.opencb.opencga.catalog.db.api.IndividualDBAdaptor;
import org.opencb.opencga.catalog.exceptions.CatalogException;
import org.opencb.opencga.catalog.models.Individual;
import org.opencb.opencga.catalog.models.acls.permissions.IndividualAclEntry;
import org.opencb.opencga.client.config.ClientConfiguration;
import java.io.IOException;
/**
* Created by imedina on 24/05/16.
*/
public class IndividualClient extends AnnotationClient<Individual, IndividualAclEntry> {
private static final String INDIVIDUALS_URL = "individuals";
public IndividualClient(String userId, String sessionId, ClientConfiguration configuration) {
super(userId, sessionId, configuration);
this.category = INDIVIDUALS_URL;
this.clazz = Individual.class;
this.aclClass = IndividualAclEntry.class;
}
public QueryResponse<Individual> create(String studyId, ObjectMap bodyParams) throws CatalogException, IOException {
ObjectMap params = new ObjectMap();
params.putIfNotNull(IndividualDBAdaptor.QueryParams.STUDY.key(), studyId);
params.putIfNotNull("body", bodyParams);
return execute(INDIVIDUALS_URL, "create", params, POST, Individual.class);
}
public QueryResponse<ObjectMap> groupBy(String studyId, String fields, ObjectMap params) throws CatalogException, IOException {
params = addParamsToObjectMap(params, "study", studyId, "fields", fields);
return execute(INDIVIDUALS_URL, "groupBy", params, GET, ObjectMap.class);
}
}