ConfigurationTest.java

/*
 * Copyright 2015-2016 OpenCB
 *
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 *
 *     http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */

package org.opencb.opencga.catalog.config;

import org.junit.Test;
import org.opencb.opencga.catalog.models.Project;
import org.opencb.opencga.catalog.models.acls.permissions.StudyAclEntry;

import java.io.FileOutputStream;
import java.io.IOException;
import java.util.*;

/**
 * Created by imedina on 16/03/16.
 */
public class ConfigurationTest {

    @Test
    public void testDefault() {
        Configuration configuration = new Configuration();

        configuration.setLogLevel("INFO");

        configuration.setDataDir("/opt/opencga/sessions");
        configuration.setTempJobsDir("/opt/opencga/sessions/jobs");

        configuration.setAdmin(new Admin("password", "admin@admin.com"));

        configuration.setMonitor(new Monitor());
        configuration.setExecution(new Execution());

        List<AuthenticationOrigin> authenticationOriginList = new ArrayList<>();
        authenticationOriginList.add(new AuthenticationOrigin("opencga", AuthenticationOrigin.AuthenticationType.OPENCGA.toString(),
                "localhost", Collections.emptyMap()));
        Map<String, Object> myMap = new HashMap<>();
        myMap.put("ou", "People");
        authenticationOriginList.add(new AuthenticationOrigin("opencga", AuthenticationOrigin.AuthenticationType.LDAP.toString(),
                "ldap://10.10.0.20:389", myMap));
        configuration.setAuthenticationOrigins(authenticationOriginList);

        Email emailServer = new Email("localhost", "", "", "", "", false);
        configuration.setEmail(emailServer);

        CatalogDBCredentials databaseCredentials = new CatalogDBCredentials(Arrays.asList("localhost"), "opencga_catalog", "admin", "");
        Catalog catalog = new Catalog();
        catalog.setOffset(1000000);
        catalog.setDatabase(databaseCredentials);
        configuration.setCatalog(catalog);

        Audit audit = new Audit(20000000, 100000000000L, "", Collections.emptyList());
        configuration.setAudit(audit);

        StudyAclEntry studyAcl = new StudyAclEntry("admin", EnumSet.of(
                StudyAclEntry.StudyPermissions.VIEW_FILE_HEADERS, StudyAclEntry.StudyPermissions.VIEW_FILE_CONTENTS,
                StudyAclEntry.StudyPermissions.VIEW_FILES, StudyAclEntry.StudyPermissions.WRITE_FILES,
                StudyAclEntry.StudyPermissions.VIEW_JOBS, StudyAclEntry.StudyPermissions.WRITE_JOBS));
        configuration.setAcl(Arrays.asList(studyAcl));

        ServerConfiguration serverConfiguration = new ServerConfiguration();
        RestServerConfiguration rest = new RestServerConfiguration(1000, 100, 1000);
        GrpcServerConfiguration grpc = new GrpcServerConfiguration(1001);
        serverConfiguration.setGrpc(grpc);
        serverConfiguration.setRest(rest);

        configuration.setServer(serverConfiguration);

//        CellBaseConfiguration cellBaseConfiguration = new CellBaseConfiguration(Arrays.asList("localhost"), "v3",
// new DatabaseCredentials(Arrays.asList("localhost"), "user", "password"));
//        QueryServerConfiguration queryServerConfiguration = new QueryServerConfiguration(61976, Arrays.asList("localhost"));
//
//        catalogConfiguration.setDefaultStorageEngineId("mongodb");
//
//        catalogConfiguration.setCellbase(cellBaseConfiguration);
//        catalogConfiguration.setServer(queryServerConfiguration);
//
//        catalogConfiguration.getStorageEngines().add(storageEngineConfiguration1);
//        catalogConfiguration.getStorageEngines().add(storageEngineConfiguration2);

        try {
            configuration.serialize(new FileOutputStream("/tmp/configuration-test.yml"));
        } catch (IOException e) {
            e.printStackTrace();
        }
    }

    @Test
    public void testLoad() throws Exception {
        Configuration configuration = Configuration
                .load(getClass().getResource("/configuration-test.yml").openStream());
        System.out.println("catalogConfiguration = " + configuration);
    }
}