/*-
* #%L
* Fiji distribution of ImageJ for the life sciences.
* %%
* Copyright (C) 2007 - 2017 Fiji developers.
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 2 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-2.0.html>.
* #L%
*/
package spim.fiji.spimdata.explorer.popup;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.util.List;
import java.util.Map;
import javax.swing.JMenuItem;
import mpicbg.spim.data.SpimData;
import mpicbg.spim.data.generic.AbstractSpimData;
import mpicbg.spim.data.generic.sequence.AbstractSequenceDescription;
import mpicbg.spim.data.sequence.ViewDescription;
import mpicbg.spim.data.sequence.ViewId;
import mpicbg.spim.io.IOFunctions;
import spim.fiji.ImgLib2Temp.Pair;
import spim.fiji.plugin.Apply_Transformation;
import spim.fiji.plugin.apply.ApplyParameters;
import spim.fiji.spimdata.explorer.ViewSetupExplorerPanel;
public class ApplyTransformationPopup extends JMenuItem implements ViewExplorerSetable
{
private static final long serialVersionUID = 5234649267634013390L;
public static boolean showWarning = true;
ViewSetupExplorerPanel< ? extends AbstractSpimData< ? extends AbstractSequenceDescription< ?, ?, ? > >, ? > panel;
public ApplyTransformationPopup()
{
super( "Apply Transformation(s) ..." );
this.addActionListener( new MyActionListener() );
}
@Override
public JMenuItem setViewExplorer( final ViewSetupExplorerPanel< ? extends AbstractSpimData< ? extends AbstractSequenceDescription< ?, ?, ? > >, ? > panel )
{
this.panel = panel;
return this;
}
public class MyActionListener implements ActionListener
{
@Override
public void actionPerformed( final ActionEvent e )
{
if ( panel == null )
{
IOFunctions.println( "Panel not set for " + this.getClass().getSimpleName() );
return;
}
if ( !SpimData.class.isInstance( panel.getSpimData() ) )
{
IOFunctions.println( "Only supported for SpimData objects: " + this.getClass().getSimpleName() );
return;
}
new Thread( new Runnable()
{
@Override
public void run()
{
final List< ViewId > viewIds = panel.selectedRowsViewId();
final SpimData data = (SpimData)panel.getSpimData();
final Apply_Transformation t = new Apply_Transformation();
final ApplyParameters params = t.queryParams( data, viewIds );
if ( params == null )
return;
final Map< ViewDescription, Pair< double[], String > > modelLinks;
// query models and apply them
if ( params.defineAs == 0 ) // matrix
modelLinks = t.queryString( data, viewIds, params );
else if ( params.defineAs == 1 ) //Rotation around axis
modelLinks = t.queryRotationAxis( data, viewIds, params );
else // Interactively using the BigDataViewer
modelLinks = t.queryBigDataViewer( data, viewIds, params );
if ( modelLinks == null )
return;
t.applyModels( data, params.minResolution, params.applyTo, modelLinks );
// update registration panel if available
panel.updateContent();
ViewSetupExplorerPanel.bdvPopup().updateBDV();
}
} ).start();
}
}
}