/**
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may not use this file except in compliance with
* the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.apache.tika.parser.isatab;
import static org.junit.Assert.*;
import java.io.InputStream;
import org.apache.tika.metadata.Metadata;
import org.apache.tika.parser.AutoDetectParser;
import org.apache.tika.parser.ParseContext;
import org.apache.tika.parser.Parser;
import org.apache.tika.sax.BodyContentHandler;
import org.junit.Test;
import org.xml.sax.ContentHandler;
public class ISArchiveParserTest {
@Test
public void testParseArchive() throws Exception {
String path = "/test-documents/testISATab_BII-I-1/s_BII-S-1.txt";
Parser parser = new ISArchiveParser(ISArchiveParserTest.class.getResource("/test-documents/testISATab_BII-I-1/").toURI().getPath());
//Parser parser = new AutoDetectParser();
ContentHandler handler = new BodyContentHandler();
Metadata metadata = new Metadata();
ParseContext context = new ParseContext();
try (InputStream stream = ISArchiveParserTest.class.getResourceAsStream(path)) {
parser.parse(stream, handler, metadata, context);
}
// INVESTIGATION
assertEquals("Invalid Investigation Identifier", "BII-I-1", metadata.get("Investigation Identifier"));
assertEquals("Invalid Investigation Title", "Growth control of the eukaryote cell: a systems biology study in yeast", metadata.get("Investigation Title"));
// INVESTIGATION PUBLICATIONS
assertEquals("Invalid Investigation PubMed ID", "17439666", metadata.get("Investigation PubMed ID"));
assertEquals("Invalid Investigation Publication DOI", "doi:10.1186/jbiol54", metadata.get("Investigation Publication DOI"));
// INVESTIGATION CONTACTS
assertEquals("Invalid Investigation Person Last Name", "Oliver", metadata.get("Investigation Person Last Name"));
assertEquals("Invalid Investigation Person First Name", "Stephen", metadata.get("Investigation Person First Name"));
}
}