/*
* Copyright 2015-2016 OpenCB
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.opencb.opencga.catalog.io;
import org.junit.BeforeClass;
import org.junit.Ignore;
import org.junit.Test;
import org.opencb.opencga.core.common.IOUtils;
import java.net.URI;
import java.nio.file.Files;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.Properties;
import static org.junit.Assert.*;
@Ignore
public class PosixCatalogIOManagerTest {
static CatalogIOManager posixCatalogIOManager;
@BeforeClass
public static void setUp() throws Exception {
System.out.println("Testing PosixIOManagerTest");
Path path = Paths.get("/tmp").resolve("opencga");
try {
if (Files.exists(path)) {
IOUtils.deleteDirectory(path);
}
Files.createDirectory(path);
Properties properties = new Properties();
properties.setProperty("CATALOG.FILE.ROOTDIR", path.toUri().toString());
posixCatalogIOManager = new PosixCatalogIOManager(properties);
} catch (Exception e) {
e.printStackTrace();
}
}
@Test
public void testCreateAccount() throws Exception {
String userId = "imedina";
URI userUri = posixCatalogIOManager.createUser(userId);
Path userPath = Paths.get(userUri);
assertTrue(Files.exists(userPath));
assertEquals("/tmp/opencga/users/" + userId + "/", userUri.getPath());
posixCatalogIOManager.deleteUser(userId);
assertFalse(Files.exists(userPath));
}
@Test
public void testCreateStudy() throws Exception {
String userId = "imedina";
String projectId = "1000g";
Path userPath = Paths.get(posixCatalogIOManager.createUser(userId));
Path projectPath = Paths.get(posixCatalogIOManager.createProject(userId, projectId));
assertTrue(Files.exists(projectPath));
assertEquals(userPath.toString() + "/projects/" + projectId, projectPath.toString());
Path studyPath = Paths.get(posixCatalogIOManager.createStudy(userId, projectId, "phase1"));
assertTrue(Files.exists(studyPath));
// assertTrue(Files.exists(studyPath.resolve("data")));
// assertTrue(Files.exists(studyPath.resolve("analysis")));
assertEquals(projectPath.toString() + "/phase1", studyPath.toString());
// posixIOManager.deleteStudy(userId, projectId, "phase1");
// assertFalse(Files.exists(studyPath));
//
// posixIOManager.deleteProject(userId, projectId);
// assertFalse(Files.exists(projectPath));
//
// posixIOManager.deleteUser(userId);
// assertFalse(Files.exists(studyPath));
}
}