package org.molgenis.ontology.core.meta;
import org.molgenis.data.meta.SystemEntityType;
import org.molgenis.ontology.core.model.OntologyPackage;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Component;
import static java.util.Objects.requireNonNull;
import static org.molgenis.data.meta.AttributeType.*;
import static org.molgenis.data.meta.model.EntityType.AttributeRole.ROLE_ID;
import static org.molgenis.data.meta.model.EntityType.AttributeRole.ROLE_LABEL;
import static org.molgenis.data.meta.model.Package.PACKAGE_SEPARATOR;
import static org.molgenis.ontology.core.model.OntologyPackage.PACKAGE_ONTOLOGY;
@Component
public class OntologyTermMetaData extends SystemEntityType
{
public static final String SIMPLE_NAME = "OntologyTerm";
public final static String ONTOLOGY_TERM = PACKAGE_ONTOLOGY + PACKAGE_SEPARATOR + SIMPLE_NAME;
public final static String ID = "id";
public final static String ONTOLOGY_TERM_IRI = "ontologyTermIRI";
public final static String ONTOLOGY_TERM_NAME = "ontologyTermName";
public final static String ONTOLOGY_TERM_SYNONYM = "ontologyTermSynonym";
public final static String ONTOLOGY_TERM_DYNAMIC_ANNOTATION = "ontologyTermDynamicAnnotation";
public final static String ONTOLOGY_TERM_NODE_PATH = "nodePath";
public final static String ONTOLOGY = "ontology";
private final OntologyPackage ontologyPackage;
private final OntologyTermSynonymMetaData ontologyTermSynonymMetaData;
private final OntologyTermDynamicAnnotationMetaData ontologyTermDynamicAnnotationMetaData;
private final OntologyTermNodePathMetaData ontologyTermNodePathMetaData;
private final OntologyMetaData ontologyMetaData;
@Autowired
public OntologyTermMetaData(OntologyPackage ontologyPackage,
OntologyTermSynonymMetaData ontologyTermSynonymMetaData,
OntologyTermDynamicAnnotationMetaData ontologyTermDynamicAnnotationMetaData,
OntologyTermNodePathMetaData ontologyTermNodePathMetaData, OntologyMetaData ontologyMetaData)
{
super(SIMPLE_NAME, PACKAGE_ONTOLOGY);
this.ontologyPackage = requireNonNull(ontologyPackage);
this.ontologyTermSynonymMetaData = requireNonNull(ontologyTermSynonymMetaData);
this.ontologyTermDynamicAnnotationMetaData = requireNonNull(ontologyTermDynamicAnnotationMetaData);
this.ontologyTermNodePathMetaData = requireNonNull(ontologyTermNodePathMetaData);
this.ontologyMetaData = requireNonNull(ontologyMetaData);
}
@Override
public void init()
{
setLabel("Ontology term");
setPackage(ontologyPackage);
addAttribute(ID, ROLE_ID).setVisible(false);
addAttribute(ONTOLOGY_TERM_IRI).setNillable(false);
addAttribute(ONTOLOGY_TERM_NAME, ROLE_LABEL).setDataType(TEXT).setNillable(false);
addAttribute(ONTOLOGY_TERM_SYNONYM).setDataType(MREF).setNillable(true)
.setRefEntity(ontologyTermSynonymMetaData);
addAttribute(ONTOLOGY_TERM_DYNAMIC_ANNOTATION).setDataType(MREF).setNillable(true)
.setRefEntity(ontologyTermDynamicAnnotationMetaData);
addAttribute(ONTOLOGY_TERM_NODE_PATH).setDataType(MREF).setNillable(true)
.setRefEntity(ontologyTermNodePathMetaData);
addAttribute(ONTOLOGY).setDataType(XREF).setNillable(false).setRefEntity(ontologyMetaData);
}
}