OtherScanParametersPanel.java

/*
 * Copyright (c) 2009 The Jackson Laboratory
 * 
 * This software was developed by Gary Churchill's Lab at The Jackson
 * Laboratory (see http://research.jax.org/faculty/churchill).
 *
 * This is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * This software is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this software.  If not, see <http://www.gnu.org/licenses/>.
 */

package org.jax.qtl.scan.gui;

import org.jax.qtl.scan.ScanCommandBuilder;

/**
 * This panel is a sort of catch all for the scan parameters that didn't
 * make it into the other panels.
 * @see ScanCommandBuilder
 * @author <A HREF="mailto:keith.sheppard@jax.org">Keith Sheppard</A>
 */
public class OtherScanParametersPanel extends ScanCommandEditorPanel
{
    /**
     * every {@link java.io.Serializable} is supposed to have one of these
     */
    private static final long serialVersionUID = -4113250306981211719L;
    
    private final ScanCommandBuilder scanCommand;
    
    /**
     * Constructor
     * @param scanCommand
     *          the scan command that this panel edits
     */
    public OtherScanParametersPanel(ScanCommandBuilder scanCommand)
    {
        this.scanCommand = scanCommand;
        this.initComponents();
        this.parametersChanged();
    }
    
    /**
     * respond to a change in the parameters
     */
    private void parametersChanged()
    {
        this.scanCommand.setUseAllMarkers(
                !this.evenlySpacedMarkersCheckBox.isSelected());
        this.scanCommand.setCleanOutput(
                this.cleanOutputCheckBox.isSelected());
        this.fireCommandModified();
    }
    
    /** This method is called from within the constructor to
     * initialize the form.
     * WARNING: Do NOT modify this code. The content of this method is
     * always regenerated by the Form Editor.
     */
    @SuppressWarnings("all")
    // <editor-fold defaultstate="collapsed" desc="Generated Code">//GEN-BEGIN:initComponents
    private void initComponents() {

        evenlySpacedMarkersCheckBox = new javax.swing.JCheckBox();
        cleanOutputCheckBox = new javax.swing.JCheckBox();

        evenlySpacedMarkersCheckBox.setSelected(true);
        evenlySpacedMarkersCheckBox.setText("Only Use Evenly Spaced Markers for Scan");
        evenlySpacedMarkersCheckBox.addItemListener(new java.awt.event.ItemListener() {
            public void itemStateChanged(java.awt.event.ItemEvent evt) {
                evenlySpacedMarkersCheckBoxItemStateChanged(evt);
            }
        });

        cleanOutputCheckBox.setText("Clean Output of Scan");
        cleanOutputCheckBox.addItemListener(new java.awt.event.ItemListener() {
            public void itemStateChanged(java.awt.event.ItemEvent evt) {
                cleanOutputCheckBoxItemStateChanged(evt);
            }
        });

        org.jdesktop.layout.GroupLayout layout = new org.jdesktop.layout.GroupLayout(this);
        this.setLayout(layout);
        layout.setHorizontalGroup(
            layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
            .add(layout.createSequentialGroup()
                .addContainerGap()
                .add(layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
                    .add(evenlySpacedMarkersCheckBox)
                    .add(cleanOutputCheckBox))
                .addContainerGap(61, Short.MAX_VALUE))
        );
        layout.setVerticalGroup(
            layout.createParallelGroup(org.jdesktop.layout.GroupLayout.LEADING)
            .add(layout.createSequentialGroup()
                .addContainerGap()
                .add(evenlySpacedMarkersCheckBox)
                .addPreferredGap(org.jdesktop.layout.LayoutStyle.RELATED)
                .add(cleanOutputCheckBox)
                .addContainerGap(org.jdesktop.layout.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
        );
    }// </editor-fold>//GEN-END:initComponents

    private void evenlySpacedMarkersCheckBoxItemStateChanged(java.awt.event.ItemEvent evt) {//GEN-FIRST:event_evenlySpacedMarkersCheckBoxItemStateChanged
        this.parametersChanged();
}//GEN-LAST:event_evenlySpacedMarkersCheckBoxItemStateChanged

    private void cleanOutputCheckBoxItemStateChanged(java.awt.event.ItemEvent evt) {//GEN-FIRST:event_cleanOutputCheckBoxItemStateChanged
        this.parametersChanged();
}//GEN-LAST:event_cleanOutputCheckBoxItemStateChanged
    

    // Variables declaration - do not modify//GEN-BEGIN:variables
    private javax.swing.JCheckBox cleanOutputCheckBox;
    private javax.swing.JCheckBox evenlySpacedMarkersCheckBox;
    // End of variables declaration//GEN-END:variables

    /**
     * {@inheritDoc}
     */
    @Override
    protected ScanCommandBuilder getScanCommand()
    {
        return this.scanCommand;
    }
    
}