/* * Licensed to the Apache Software Foundation (ASF) under one * or more contributor license agreements. See the NOTICE file * distributed with this work for additional information * regarding copyright ownership. The ASF licenses this file * to you under the Apache License, Version 2.0 (the * "License"); you may not use this file except in compliance * with the License. You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed under the License is distributed on an "AS IS" BASIS, * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. * See the License for the specific language governing permissions and * limitations under the License. */ package org.apache.giraph.examples; import com.google.common.base.Preconditions; import org.apache.giraph.edge.Edge; import org.apache.giraph.graph.Vertex; import org.apache.giraph.utils.MathUtils; import org.apache.hadoop.io.DoubleWritable; import org.apache.hadoop.io.LongWritable; /** * Executes "RandomWalkWithRestart", a random walk on the graph which is biased * towards a source vertex. The resulting probabilities of staying at a given * vertex can be interpreted as a measure of proximity to the source vertex. */ public class RandomWalkWithRestartComputation extends RandomWalkComputation<DoubleWritable> { /** Configuration parameter for the source vertex */ static final String SOURCE_VERTEX = RandomWalkWithRestartComputation.class .getName() + ".sourceVertex"; /** * Checks whether the currently executed vertex is the source vertex * @param vertex Vertex * @return is the currently executed vertex the source vertex? */ private boolean isSourceVertex(Vertex<LongWritable, ?, ?> vertex) { return ((RandomWalkWorkerContext) getWorkerContext()).isSource( vertex.getId().get()); } /** * Returns the number of source vertices. * @return The number of source vertices. */ private int numSourceVertices() { return ((RandomWalkWorkerContext) getWorkerContext()).numSources(); } @Override protected double transitionProbability( Vertex<LongWritable, DoubleWritable, DoubleWritable> vertex, double stateProbability, Edge<LongWritable, DoubleWritable> edge) { return stateProbability * edge.getValue().get(); } @Override protected double recompute( Vertex<LongWritable, DoubleWritable, DoubleWritable> vertex, Iterable<DoubleWritable> transitionProbabilities, double teleportationProbability) { int numSourceVertices = numSourceVertices(); Preconditions.checkState(numSourceVertices > 0, "No source vertex found"); double stateProbability = MathUtils.sum(transitionProbabilities); // Add the contribution of dangling nodes (weakly preferential // implementation: dangling nodes redistribute uniformly) stateProbability += getDanglingProbability() / getTotalNumVertices(); // The random walk might teleport back to one of the source vertexes stateProbability *= 1 - teleportationProbability; if (isSourceVertex(vertex)) { stateProbability += teleportationProbability / numSourceVertices; } return stateProbability; } }