BamFlags.java

package htsjdk.samtools.cram.encoding.reader;

/**
 * Created by vadim on 28/07/2015.
 */
public class BamFlags {
    public static final int READ_PAIRED_FLAG = 0x1;
    public static final int PROPER_PAIR_FLAG = 0x2;
    public static final int READ_UNMAPPED_FLAG = 0x4;
    public static final int MATE_UNMAPPED_FLAG = 0x8;
    public static final int READ_STRAND_FLAG = 0x10;
    public static final int MATE_STRAND_FLAG = 0x20;
    public static final int FIRST_OF_PAIR_FLAG = 0x40;
    public static final int SECOND_OF_PAIR_FLAG = 0x80;
    public static final int NOT_PRIMARY_ALIGNMENT_FLAG = 0x100;
    public static final int READ_FAILS_VENDOR_QUALITY_CHECK_FLAG = 0x200;
    public static final int DUPLICATE_READ_FLAG = 0x400;
    public static final int SUPPLEMENTARY_FLAG = 0x800;
}