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bio4j-neo4j-master
src
main
java
com
bio4j
neo4j
BasicEntity.java
BasicRelationship.java
Neo4jManager.java
codesamples
BiodieselProductionSample.java
GetEnzymeData.java
GetGOAnnotationsForOrganism.java
GetGenesInfo.java
GetProteinsWithInterpro.java
RealUseCase1.java
RetrieveProteinSample.java
model
nodes
AlternativeProductNode.java
CityNode.java
CommentTypeNode.java
ConsortiumNode.java
CountryNode.java
DatasetNode.java
EnzymeNode.java
FeatureTypeNode.java
GoTermNode.java
InstituteNode.java
InterproNode.java
IsoformNode.java
KeywordNode.java
OrganismNode.java
PersonNode.java
PfamNode.java
ProteinNode.java
SequenceCautionNode.java
SubcellularLocationNode.java
TaxonNode.java
citation
ArticleNode.java
BookNode.java
DBNode.java
JournalNode.java
OnlineArticleNode.java
OnlineJournalNode.java
PatentNode.java
PublisherNode.java
SubmissionNode.java
ThesisNode.java
UnpublishedObservationNode.java
ncbi
NCBITaxonNode.java
reactome
ReactomeTermNode.java
refseq
CDSNode.java
GeneNode.java
GenomeElementNode.java
rna
MRNANode.java
MiscRNANode.java
NcRNANode.java
RNANode.java
RRNANode.java
TRNANode.java
TmRNANode.java
relationships
InstituteCountryRel.java
IsoformEventGeneratorRel.java
SubcellularLocationParentRel.java
TaxonParentRel.java
aproducts
AlternativeProductInitiationRel.java
AlternativeProductPromoterRel.java
AlternativeProductRibosomalFrameshiftingRel.java
AlternativeProductSplicingRel.java
citation
article
ArticleAuthorRel.java
ArticleJournalRel.java
ArticleProteinCitationRel.java
book
BookAuthorRel.java
BookCityRel.java
BookEditorRel.java
BookProteinCitationRel.java
BookPublisherRel.java
onarticle
OnlineArticleAuthorRel.java
OnlineArticleJournalRel.java
OnlineArticleProteinCitationRel.java
patent
PatentAuthorRel.java
PatentProteinCitationRel.java
submission
SubmissionAuthorRel.java
SubmissionDbRel.java
SubmissionProteinCitationRel.java
thesis
ThesisAuthorRel.java
ThesisInstituteRel.java
ThesisProteinCitationRel.java
uo
UnpublishedObservationAuthorRel.java
UnpublishedObservationProteinCitationRel.java
comment
AllergenCommentRel.java
BasicCommentRel.java
BioPhysicoChemicalPropertiesCommentRel.java
BiotechnologyCommentRel.java
CatalyticActivityCommentRel.java
CautionCommentRel.java
CofactorCommentRel.java
DevelopmentalStageCommentRel.java
DiseaseCommentRel.java
DisruptionPhenotypeCommentRel.java
DomainCommentRel.java
EnzymeRegulationCommentRel.java
FunctionCommentRel.java
InductionCommentRel.java
MassSpectrometryCommentRel.java
MiscellaneousCommentRel.java
OnlineInformationCommentRel.java
PathwayCommentRel.java
PharmaceuticalCommentRel.java
PolymorphismCommentRel.java
PostTranslationalModificationCommentRel.java
RnaEditingCommentRel.java
SimilarityCommentRel.java
SubunitCommentRel.java
TissueSpecificityCommentRel.java
ToxicDoseCommentRel.java
features
ActiveSiteFeatureRel.java
BasicFeatureRel.java
BindingSiteFeatureRel.java
CalciumBindingRegionFeatureRel.java
ChainFeatureRel.java
CoiledCoilRegionFeatureRel.java
CompositionallyBiasedRegionFeatureRel.java
CrossLinkFeatureRel.java
DisulfideBondFeatureRel.java
DnaBindingRegionFeatureRel.java
DomainFeatureRel.java
GlycosylationSiteFeatureRel.java
HelixFeatureRel.java
InitiatorMethionineFeatureRel.java
IntramembraneRegionFeatureRel.java
LipidMoietyBindingRegionFeatureRel.java
MetalIonBindingSiteFeatureRel.java
ModifiedResidueFeatureRel.java
MutagenesisSiteFeatureRel.java
NonConsecutiveResiduesFeatureRel.java
NonStandardAminoAcidFeatureRel.java
NonTerminalResidueFeatureRel.java
NucleotidePhosphateBindingRegionFeatureRel.java
PeptideFeatureRel.java
PropeptideFeatureRel.java
RegionOfInterestFeatureRel.java
RepeatFeatureRel.java
SequenceConflictFeatureRel.java
SequenceVariantFeatureRel.java
ShortSequenceMotifFeatureRel.java
SignalPeptideFeatureRel.java
SiteFeatureRel.java
SpliceVariantFeatureRel.java
StrandFeatureRel.java
TopologicalDomainFeatureRel.java
TransitPeptideFeatureRel.java
TransmembraneRegionFeatureRel.java
TurnFeatureRel.java
UnsureResidueFeatureRel.java
ZincFingerRegionFeatureRel.java
go
BiologicalProcessRel.java
CellularComponentRel.java
HasPartOfGoRel.java
IsAGoRel.java
MainGoRel.java
MolecularFunctionRel.java
NegativelyRegulatesGoRel.java
PartOfGoRel.java
PositivelyRegulatesGoRel.java
RegulatesGoRel.java
ncbi
NCBIMainTaxonRel.java
NCBITaxonParentRel.java
NCBITaxonRel.java
protein
BasicProteinSequenceCautionRel.java
ProteinDatasetRel.java
ProteinEnzymaticActivityRel.java
ProteinErroneousGeneModelPredictionRel.java
ProteinErroneousInitiationRel.java
ProteinErroneousTerminationRel.java
ProteinErroneousTranslationRel.java
ProteinFrameshiftRel.java
ProteinGenomeElementRel.java
ProteinGoRel.java
ProteinInterproRel.java
ProteinIsoformInteractionRel.java
ProteinIsoformRel.java
ProteinKeywordRel.java
ProteinMiscellaneousDiscrepancyRel.java
ProteinOrganismRel.java
ProteinPfamRel.java
ProteinProteinInteractionRel.java
ProteinReactomeRel.java
ProteinSubcellularLocationRel.java
refseq
GenomeElementCDSRel.java
GenomeElementGeneRel.java
GenomeElementMRnaRel.java
GenomeElementMiscRnaRel.java
GenomeElementNcRnaRel.java
GenomeElementRRnaRel.java
GenomeElementTRnaRel.java
GenomeElementTmRnaRel.java
sc
ErroneousGeneModelPredictionRel.java
ErroneousInitiationRel.java
ErroneousTerminationRel.java
ErroneousTranslationRel.java
FrameshiftRel.java
MiscellaneousDiscrepancyRel.java
uniref
UniRef100MemberRel.java
UniRef50MemberRel.java
UniRef90MemberRel.java
util
Bio4jManager.java
GoUtil.java
NodeIndexer.java
NodeRetriever.java
UniprotStuff.java
programs
GetProteinData.java
ImportEnzymeDB.java
ImportGeneOntology.java
ImportIsoformSequences.java
ImportNCBITaxonomy.java
ImportNeo4jDB.java
ImportProteinInteractions.java
ImportRefSeq.java
ImportUniprot.java
ImportUniref.java
IndexNCBITaxonomyByGiId.java
InitBio4jDB.java
UploadRefSeqSequencesToS3.java
ohnosequences
util
Executable.java
ExecuteFromFile.java
genbank
GBCommon.java
xml
api
interfaces
IAttribute.java
IElement.java
INameSpace.java
IXmlThing.java
package-info.java
model
NameSpace.java
XMLAttribute.java
XMLElement.java
XMLElementException.java
package-info.java
util
XMLUtil.java
model
bio4j
Bio4jNodeIndexXML.java
Bio4jNodeXML.java
Bio4jPropertyXML.java
Bio4jRelationshipIndexXML.java
Bio4jRelationshipXML.java
UniprotDataXML.java
go
GOSlimXML.java
GoAnnotationXML.java
GoTermXML.java
SlimSetXML.java
uniprot
ArticleXML.java
CommentXML.java
FeatureXML.java
InterproXML.java
IsoformXML.java
KeywordXML.java
ProteinXML.java
SubcellularLocationXML.java
util
Argument.java
Arguments.java
Error.java
Execution.java
FlexXMLWrapperClassCreator.java
ScheduledExecutions.java
XMLWrapperClass.java
XMLWrapperClassCreator.java
/** * XML management interfaces */ package com.ohnosequences.xml.api.interfaces;