CoverageExtender.java

// $Id: CoverageExtender.java,v 1.4 2009/01/13 19:49:31 cmzmasek Exp $
// FORESTER -- software libraries and applications
// for evolutionary biology research and applications.
//
// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
// 
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
// 
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: cmzmasek@yahoo.com
// WWW: www.phylosoft.org/forester

package org.forester.pccx;

import java.io.PrintStream;
import java.util.List;

import org.forester.phylogeny.Phylogeny;

/*
 * @author Christian M. Zmasek
 */
public interface CoverageExtender {

    public abstract List<String> find( final List<Phylogeny> phylogenies,
                                       final List<String> already_covered,
                                       int number_names_to_find,
                                       final CoverageCalculationOptions options,
                                       final PrintStream out );
}