/*
* Concept profile generation tool suite
* Copyright (C) 2015 Biosemantics Group, Erasmus University Medical Center,
* Rotterdam, The Netherlands
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Affero General Public License for more details.
*
* You should have received a copy of the GNU Affero General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>
*/
package org.erasmusmc.dataimport.UMLS;
import org.erasmusmc.ids.DatabaseID;
import org.erasmusmc.ontology.Concept;
import org.erasmusmc.ontology.Ontology;
import org.erasmusmc.utilities.StringUtilities;
public class AddUMLSidAsDatabaseID {
public static Ontology addUMLSid(Ontology ontology){
for (Concept concept: ontology){
if (concept.getID()>-1){
DatabaseID databaseID = new DatabaseID("UMLS", StringUtilities.formatNumber("C0000000", concept.getID()));
ontology.setDatabaseIDForConcept(concept.getID(), databaseID);
}
}
return ontology;
}
}