Document.java

/**
 * Copyright (c) 2014 Lemur Consulting Ltd.
 * <p/>
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use this file except in compliance with the License.
 * You may obtain a copy of the License at
 * <p/>
 * http://www.apache.org/licenses/LICENSE-2.0
 * <p/>
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 */
package uk.co.flax.biosolr.ontology.api;

import com.fasterxml.jackson.annotation.JsonProperty;
import org.apache.solr.client.solrj.beans.Field;

import java.util.HashMap;
import java.util.List;
import java.util.Map;

/**
 * A document, as stored in the documents index.
 * 
 * @author Matt Pearce
 */
public class Document {
	
	public static final String RELATED_IRI_SUFFIX = "_rel_uris_s";
	public static final String RELATED_LABEL_SUFFIX = "_rel_labels_t";
	
	@Field("id")
	private String id;
	
	@Field("gid")
	private int gid;
	
	@Field("study_id")
	@JsonProperty("study_id")
	private int studyId;
	
	@Field("study")
	private int study;
	
	@Field("first_author")
	@JsonProperty("first_author")
	private String firstAuthor;
	
	@Field("publication")
	private String publication;
	
	@Field("title")
	private String title;
	
	@Field("snp")
	private String snp;
	
	@Field("disease_trait")
	@JsonProperty("disease_trait")
	private String diseaseTrait;
	
//	@Field("p_value")
//	private double pValue;
	
	@Field("efo_uri")
	@JsonProperty("efo_uri")
	private String efoUri;
	
	@Field("efo_uri_hash")
	private String efoUriHash;
	
	@Field("uri_key")
	private int uriKey;
	
	@Field("efo_uri_label_t")
	private List<String> efoLabels;
	
	@Field("efo_uri_parent_labels_t")
	private List<String> parentLabels;
	
	@Field("efo_uri_child_labels_t")
	private List<String> childLabels;
	
	@Field("facet_labels")
	private List<String> facetLabels;

	@Field("*_rel_uris_s")
	private Map<String, List<String>> relatedIris = new HashMap<>();
	@Field("*_rel_labels_t")
	private Map<String, List<String>> relatedLabels = new HashMap<>();
	
	@Field("child_hierarchy")
	private String childHierarchy;
	
	/**
	 * @return the gid
	 */
	public int getGid() {
		return gid;
	}

	/**
	 * @param gid the gid to set
	 */
	public void setGid(int gid) {
		this.gid = gid;
	}

	/**
	 * @return the studyId
	 */
	public int getStudyId() {
		return studyId;
	}

	/**
	 * @param studyId the studyId to set
	 */
	public void setStudyId(int studyId) {
		this.studyId = studyId;
	}

	/**
	 * @return the study
	 */
	public int getStudy() {
		return study;
	}

	/**
	 * @param study the study to set
	 */
	public void setStudy(int study) {
		this.study = study;
	}

	/**
	 * @return the firstAuthor
	 */
	public String getFirstAuthor() {
		return firstAuthor;
	}

	/**
	 * @param firstAuthor the firstAuthor to set
	 */
	public void setFirstAuthor(String firstAuthor) {
		this.firstAuthor = firstAuthor;
	}

	/**
	 * @return the publication
	 */
	public String getPublication() {
		return publication;
	}

	/**
	 * @param publication the publication to set
	 */
	public void setPublication(String publication) {
		this.publication = publication;
	}

	/**
	 * @return the title
	 */
	public String getTitle() {
		return title;
	}

	/**
	 * @param title the title to set
	 */
	public void setTitle(String title) {
		this.title = title;
	}

	/**
	 * @return the snp
	 */
	public String getSnp() {
		return snp;
	}

	/**
	 * @param snp the snp to set
	 */
	public void setSnp(String snp) {
		this.snp = snp;
	}

	/**
	 * @return the diseaseTrait
	 */
	public String getDiseaseTrait() {
		return diseaseTrait;
	}

	/**
	 * @param diseaseTrait the diseaseTrait to set
	 */
	public void setDiseaseTrait(String diseaseTrait) {
		this.diseaseTrait = diseaseTrait;
	}

//	/**
//	 * @return the pValue
//	 */
//	public double getpValue() {
//		return pValue;
//	}
//
//	/**
//	 * @param pValue the pValue to set
//	 */
//	public void setpValue(double pValue) {
//		this.pValue = pValue;
//	}

	/**
	 * @return the efoUri
	 */
	public String getEfoUri() {
		return efoUri;
	}

	/**
	 * @param efoUri the efoUri to set
	 */
	public void setEfoUri(String efoUri) {
		this.efoUri = efoUri;
	}

	/**
	 * @return the efoUriHash
	 */
	public String getEfoUriHash() {
		return efoUriHash;
	}

	/**
	 * @param efoUriHash the efoUriHash to set
	 */
	public void setEfoUriHash(String efoUriHash) {
		this.efoUriHash = efoUriHash;
	}

	/**
	 * @return the uriKey
	 */
	public int getUriKey() {
		return uriKey;
	}

	/**
	 * @param uriKey the uriKey to set
	 */
	public void setUriKey(int uriKey) {
		this.uriKey = uriKey;
	}

	/**
	 * @return the id
	 */
	public String getId() {
		return id;
	}

	/**
	 * @param id the id to set
	 */
	public void setId(String id) {
		this.id = id;
	}

	/**
	 * @return the uriLabel
	 */
	public List<String> getEfoLabels() {
		return efoLabels;
	}

	public void setEfoLabels(List<String> efoLabels) {
		this.efoLabels = efoLabels;
	}

	/**
	 * @return the parentLabels
	 */
	public List<String> getParentLabels() {
		return parentLabels;
	}

	/**
	 * @param parentLabels the parentLabels to set
	 */
	public void setParentLabels(List<String> parentLabels) {
		this.parentLabels = parentLabels;
	}

	/**
	 * @return the childLabels
	 */
	public List<String> getChildLabels() {
		return childLabels;
	}

	/**
	 * @param childLabels the childLabels to set
	 */
	public void setChildLabels(List<String> childLabels) {
		this.childLabels = childLabels;
	}

	/**
	 * @return the relatedIris
	 */
	public Map<String, List<String>> getRelatedIris() {
		return relatedIris;
	}

	/**
	 * @param relatedIris the relatedIris to set
	 */
	public void setRelatedIris(Map<String, List<String>> relatedIris) {
		this.relatedIris = relatedIris;
	}

	/**
	 * @return the relatedLabels
	 */
	public Map<String, List<String>> getRelatedLabels() {
		return relatedLabels;
	}

	/**
	 * @param relatedLabels the relatedLabels to set
	 */
	public void setRelatedLabels(Map<String, List<String>> relatedLabels) {
		this.relatedLabels = relatedLabels;
	}

	/**
	 * @return the childHierarchy
	 */
	public String getChildHierarchy() {
		return childHierarchy;
	}

	/**
	 * @param childHierarchy the childHierarchy to set
	 */
	public void setChildHierarchy(String childHierarchy) {
		this.childHierarchy = childHierarchy;
	}

	/**
	 * @return the facetLabels
	 */
	public List<String> getFacetLabels() {
		return facetLabels;
	}

	/**
	 * @param facetLabels the facetLabels to set
	 */
	public void setFacetLabels(List<String> facetLabels) {
		this.facetLabels = facetLabels;
	}

}