package org.hl7.fhir.dstu2016may.hapi.validation;
import static org.hamcrest.Matchers.containsString;
import static org.hamcrest.Matchers.not;
import static org.hamcrest.Matchers.stringContainsInOrder;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertThat;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import java.io.IOException;
import java.util.ArrayList;
import java.util.Date;
import java.util.List;
import org.apache.commons.io.IOUtils;
import org.hamcrest.core.StringContains;
import org.hl7.fhir.dstu2016may.model.CodeableConcept;
import org.hl7.fhir.dstu2016may.model.Coding;
import org.hl7.fhir.dstu2016may.model.Condition;
import org.hl7.fhir.dstu2016may.model.Condition.ConditionVerificationStatus;
import org.hl7.fhir.dstu2016may.model.DateType;
import org.hl7.fhir.dstu2016may.model.Narrative.NarrativeStatus;
import org.hl7.fhir.dstu2016may.model.OperationOutcome;
import org.hl7.fhir.dstu2016may.model.Patient;
import org.hl7.fhir.dstu2016may.model.Reference;
import org.hl7.fhir.dstu2016may.model.StringType;
import org.junit.AfterClass;
import org.junit.Ignore;
import org.junit.Test;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.parser.IParser;
import ca.uhn.fhir.parser.StrictErrorHandler;
import ca.uhn.fhir.parser.XmlParserDstu2_1Test;
import ca.uhn.fhir.util.TestUtil;
import ca.uhn.fhir.validation.FhirValidator;
import ca.uhn.fhir.validation.SchemaBaseValidator;
import ca.uhn.fhir.validation.ValidationResult;
import ca.uhn.fhir.validation.schematron.SchematronBaseValidator;
public class ResourceValidatorDstu2_1Test {
private static FhirContext ourCtx = FhirContext.forDstu2_1();
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ResourceValidatorDstu2_1Test.class);
@AfterClass
public static void afterClassClearContext() {
TestUtil.clearAllStaticFieldsForUnitTest();
}
/**
* See issue #50
*/
@Test()
public void testOutOfBoundsDate() {
Patient p = new Patient();
p.setBirthDateElement(new DateType("2000-12-31"));
// Put in an invalid date
IParser parser = ourCtx.newXmlParser();
parser.setParserErrorHandler(new StrictErrorHandler());
String encoded = parser.setPrettyPrint(true).encodeResourceToString(p).replace("2000-12-31", "2000-15-31");
ourLog.info(encoded);
assertThat(encoded, StringContains.containsString("2000-15-31"));
ValidationResult result = ourCtx.newValidator().validateWithResult(encoded);
String resultString = parser.setPrettyPrint(true).encodeResourceToString(result.toOperationOutcome());
ourLog.info(resultString);
assertEquals(2, ((OperationOutcome)result.toOperationOutcome()).getIssue().size());
assertThat(resultString, StringContains.containsString("cvc-pattern-valid"));
try {
parser.parseResource(encoded);
fail();
} catch (DataFormatException e) {
assertEquals("DataFormatException at [[row,col {unknown-source}]: [2,4]]: Invalid attribute value \"2000-15-31\": Invalid date/time format: \"2000-15-31\"", e.getMessage());
}
}
/**
* Make sure that the elements that appear in all resources (meta, language, extension, etc) all appear in the correct order
*/
@Test
public void testValidateResourceWithResourceElements() {
XmlParserDstu2_1Test.TestPatientFor327 patient = new XmlParserDstu2_1Test.TestPatientFor327();
patient.setBirthDate(new Date());
patient.setId("123");
patient.getText().setDivAsString("<div>FOO</div>");
patient.getText().setStatus(NarrativeStatus.GENERATED);
patient.getLanguageElement().setValue("en");
patient.addExtension().setUrl("http://foo").setValue(new StringType("MOD"));
patient.getMeta().setLastUpdated(new Date());
List<Reference> conditions = new ArrayList<Reference>();
Condition condition = new Condition();
condition.getPatient().setReference("Patient/123");
condition.addBodySite().setText("BODY SITE");
condition.getCode().setText("CODE");
condition.setClinicalStatus("active");
condition.setVerificationStatus(ConditionVerificationStatus.CONFIRMED);
conditions.add(new Reference(condition));
patient.setCondition(conditions);
patient.addIdentifier().setSystem("http://foo").setValue("123");
String encoded = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(patient);
ourLog.info(encoded);
FhirValidator val = ourCtx.newValidator();
val.registerValidatorModule(new SchemaBaseValidator(ourCtx));
val.registerValidatorModule(new SchematronBaseValidator(ourCtx));
val.registerValidatorModule(new FhirInstanceValidator());
ValidationResult result = val.validateWithResult(encoded);
OperationOutcome operationOutcome = (OperationOutcome) result.toOperationOutcome();
String ooencoded = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(operationOutcome);
ourLog.info(ooencoded);
assertTrue(result.isSuccessful());
assertThat(ooencoded, containsString("No issues detected"));
}
/**
* See https://groups.google.com/d/msgid/hapi-fhir/a266083f-6454-4cf0-a431-c6500f052bea%40googlegroups.com?utm_medium= email&utm_source=footer
*/
@Test
public void testValidateWithExtensionsXml() {
PatientProfileDstu2_1 myPatient = new PatientProfileDstu2_1();
myPatient.setId("1");
myPatient.setColorPrimary(new CodeableConcept().addCoding(new Coding().setSystem("http://example.com#animalColor").setCode("furry-grey")));
myPatient.setColorSecondary(new CodeableConcept().addCoding(new Coding().setSystem("http://example.com#animalColor").setSystem("furry-white")));
myPatient.setOwningOrganization(new Reference("Organization/2.25.79433498044103547197447759549862032393"));
myPatient.addName().addFamily("FamilyName");
myPatient.addExtension().setUrl("http://foo.com/example").setValue(new StringType("String Extension"));
IParser p = ourCtx.newXmlParser().setPrettyPrint(true);
String messageString = p.encodeResourceToString(myPatient);
ourLog.info(messageString);
//@formatter:off
assertThat(messageString, stringContainsInOrder(
"meta",
"Organization/2.25.79433498044103547197447759549862032393",
"furry-grey",
"furry-white",
"String Extension",
"FamilyName"
));
assertThat(messageString, not(stringContainsInOrder(
"extension",
"meta"
)));
assertThat(messageString, containsString("url=\"http://ahr.copa.inso.tuwien.ac.at/StructureDefinition/Patient#animal-colorSecondary\""));
assertThat(messageString, containsString("url=\"http://foo.com/example\""));
//@formatter:on
FhirValidator val = ourCtx.newValidator();
val.registerValidatorModule(new SchemaBaseValidator(ourCtx));
val.registerValidatorModule(new SchematronBaseValidator(ourCtx));
val.registerValidatorModule(new FhirInstanceValidator());
ValidationResult result = val.validateWithResult(messageString);
OperationOutcome operationOutcome = (OperationOutcome) result.toOperationOutcome();
String encoded = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(operationOutcome);
ourLog.info(encoded);
assertTrue(result.isSuccessful());
assertThat(messageString, containsString("valueReference"));
assertThat(messageString, not(containsString("valueResource")));
}
/**
* Per email from Jon Zammit
*/
@Test
@Ignore
public void testValidateQuestionnaire() throws IOException {
String input = IOUtils.toString(getClass().getResourceAsStream("/questionnaire_jon_z_20160506.xml"));
FhirValidator val = ourCtx.newValidator();
val.registerValidatorModule(new FhirInstanceValidator());
ValidationResult result = val.validateWithResult(input);
OperationOutcome operationOutcome = (OperationOutcome) result.toOperationOutcome();
String ooencoded = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(operationOutcome);
ourLog.info(ooencoded);
assertTrue(result.isSuccessful());
}
/**
* See https://groups.google.com/d/msgid/hapi-fhir/a266083f-6454-4cf0-a431-c6500f052bea%40googlegroups.com?utm_medium= email&utm_source=footer
*/
@Test
public void testValidateWithExtensionsJson() {
PatientProfileDstu2_1 myPatient = new PatientProfileDstu2_1();
myPatient.setId("1");
myPatient.setColorPrimary(new CodeableConcept().addCoding(new Coding().setSystem("http://example.com#animalColor").setCode("furry-grey")));
myPatient.setColorSecondary(new CodeableConcept().addCoding(new Coding().setSystem("http://example.com#animalColor").setSystem("furry-white")));
myPatient.setOwningOrganization(new Reference("Organization/2.25.79433498044103547197447759549862032393"));
myPatient.addName().addFamily("FamilyName");
myPatient.addExtension().setUrl("http://foo.com/example").setValue(new StringType("String Extension"));
IParser p = ourCtx.newJsonParser().setPrettyPrint(true);
String messageString = p.encodeResourceToString(myPatient);
ourLog.info(messageString);
//@formatter:off
assertThat(messageString, stringContainsInOrder(
"meta",
"String Extension",
"Organization/2.25.79433498044103547197447759549862032393",
"furry-grey",
"furry-white",
"FamilyName"
));
assertThat(messageString, not(stringContainsInOrder(
"extension",
"meta"
)));
//@formatter:on
FhirValidator val = ourCtx.newValidator();
val.registerValidatorModule(new SchemaBaseValidator(ourCtx));
val.registerValidatorModule(new SchematronBaseValidator(ourCtx));
val.registerValidatorModule(new FhirInstanceValidator());
ValidationResult result = val.validateWithResult(messageString);
OperationOutcome operationOutcome = (OperationOutcome) result.toOperationOutcome();
String encoded = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(operationOutcome);
ourLog.info(encoded);
assertTrue(result.isSuccessful());
assertThat(messageString, containsString("valueReference"));
assertThat(messageString, not(containsString("valueResource")));
}
}