/* * This is eMonocot, a global online biodiversity information resource. * * Copyright © 2011–2015 The Board of Trustees of the Royal Botanic Gardens, Kew and The University of Oxford * * eMonocot is free software: you can redistribute it and/or modify it under the terms of the * GNU Affero General Public License as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * eMonocot is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even * the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Affero General Public License for more details. * * The complete text of the GNU Affero General Public License is in the source repository as the file * ‘COPYING’. It is also available from <http://www.gnu.org/licenses/>. */ package org.emonocot.job.delta; import static org.junit.Assert.assertEquals; import static org.junit.Assert.assertNotNull; import java.io.IOException; import java.util.HashMap; import java.util.Map; import java.util.UUID; import org.junit.Test; import org.junit.runner.RunWith; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.batch.core.Job; import org.springframework.batch.core.JobExecution; import org.springframework.batch.core.JobParameter; import org.springframework.batch.core.JobParameters; import org.springframework.batch.core.JobParametersInvalidException; import org.springframework.batch.core.StepExecution; import org.springframework.batch.core.configuration.JobLocator; import org.springframework.batch.core.launch.JobLauncher; import org.springframework.batch.core.launch.NoSuchJobException; import org.springframework.batch.core.repository.JobExecutionAlreadyRunningException; import org.springframework.batch.core.repository.JobInstanceAlreadyCompleteException; import org.springframework.batch.core.repository.JobRestartException; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Qualifier; import org.springframework.core.io.ClassPathResource; import org.springframework.test.annotation.DirtiesContext; import org.springframework.test.annotation.DirtiesContext.ClassMode; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; @RunWith(SpringJUnit4ClassRunner.class) @ContextConfiguration({ "/META-INF/spring/batch/jobs/deltaToDwc.xml", "/META-INF/spring/applicationContext-integration.xml", "/META-INF/spring/applicationContext-test.xml" }) @DirtiesContext(classMode = ClassMode.AFTER_CLASS) public class DeltaNaturalLanguageDwcIntegrationTest { private Logger logger = LoggerFactory.getLogger(DeltaNaturalLanguageDwcIntegrationTest.class); private ClassPathResource specsFile = new ClassPathResource("org/emonocot/job/delta/tonat"); private ClassPathResource itemsFile = new ClassPathResource("org/emonocot/job/delta/items"); private ClassPathResource taxonFile = new ClassPathResource("org/emonocot/job/delta/taxon.txt"); @Autowired private JobLocator jobLocator; @Autowired @Qualifier("readWriteJobLauncher") private JobLauncher jobLauncher; @Test public void testCreateGenericArchive() throws NoSuchJobException, JobExecutionAlreadyRunningException, JobRestartException, JobInstanceAlreadyCompleteException, JobParametersInvalidException, IOException { Map<String, JobParameter> parameters = new HashMap<String, JobParameter>(); parameters.put("specs.file", new JobParameter(specsFile.getFile().getAbsolutePath())); parameters.put("items.file", new JobParameter(itemsFile.getFile().getAbsolutePath())); parameters.put("taxon.file", new JobParameter(taxonFile.getFile().getAbsolutePath())); parameters.put("fields.terminated.by", new JobParameter(",")); parameters.put("fields.enclosed.by", new JobParameter("\"")); parameters.put("output.fields",new JobParameter("taxonID,description,language,license")); parameters.put("taxon.file.skip.lines", new JobParameter("1")); parameters.put("taxon.file.field.names", new JobParameter("taxonID,subfamily,subtribe,tribe,accessRights,bibliographicCitation,created,license,modified,references,rights,rightsHolder,acceptedNameUsage,acceptedNameUsageID,class,datasetID,datasetName,family,genus,infraspecificEpithet,kingdom,nameAccordingTo,namePublishedIn,namePublishedInID,namePublishedInYear,nomenclaturalCode,nomenclaturalStatus,order,originalNameUsage,originalNameUsageID,parentNameUsage,parentNameUsageID,phylum,scientificName,scientificNameAuthorship,scientificNameID,specificEpithet,subgenus,taxonRank,taxonRemarks,taxonomicStatus,verbatimTaxonRank")); parameters.put("taxon.file.delimiter", new JobParameter("\t")); parameters.put("taxon.file.quote.character", new JobParameter("\"")); parameters.put("description.file.field.names", new JobParameter("taxonID,description,license,language,type,rights")); parameters.put("description.default.values", new JobParameter("license=http://creativecommons.org/licenses/by-nc-sa/3.0,language=EN,type=general,rights=© Copyright The Board of Trustees\\, Royal Botanic Gardens\\, Kew.")); parameters.put("archive.file", new JobParameter(UUID.randomUUID().toString())); JobParameters jobParameters = new JobParameters(parameters); Job deltaToDwC = jobLocator.getJob("DeltaToDwC"); assertNotNull("DeltaToDwC must not be null", deltaToDwC); JobExecution jobExecution = jobLauncher.run(deltaToDwC, jobParameters); assertEquals("The job should complete successfully",jobExecution.getExitStatus().getExitCode(),"COMPLETED"); for (StepExecution stepExecution : jobExecution.getStepExecutions()) { logger.info(stepExecution.getStepName() + " " + stepExecution.getReadCount() + " " + stepExecution.getFilterCount() + " " + stepExecution.getWriteCount() + " " + stepExecution.getCommitCount()); } } }