/* * This is eMonocot, a global online biodiversity information resource. * * Copyright © 2011–2015 The Board of Trustees of the Royal Botanic Gardens, Kew and The University of Oxford * * eMonocot is free software: you can redistribute it and/or modify it under the terms of the * GNU Affero General Public License as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * eMonocot is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even * the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Affero General Public License for more details. * * The complete text of the GNU Affero General Public License is in the source repository as the file * ‘COPYING’. It is also available from <http://www.gnu.org/licenses/>. */ package org.emonocot.job.iucn; import java.io.File; import java.util.UUID; import org.springframework.batch.core.StepContribution; import org.springframework.batch.core.scope.context.ChunkContext; import org.springframework.batch.core.step.tasklet.Tasklet; import org.springframework.batch.item.ExecutionContext; import org.springframework.batch.repeat.RepeatStatus; /** * * @author ben * */ public class SetTemporaryFilenamesTasklet implements Tasklet { private String harvesterSpoolDirectory; private String subtribe; private String tribe; private String subfamily; private String family; public void setHarvesterSpoolDirectory(String newHarvesterSpoolDirectory) { this.harvesterSpoolDirectory = newHarvesterSpoolDirectory; } public void setSubtribe(String subtribe) { this.subtribe = subtribe; } public void setTribe(String tribe) { this.tribe = tribe; } public void setSubfamily(String subfamily) { this.subfamily = subfamily; } public void setFamily(String family) { this.family = family; } /** * @param contribution Set the step contribution * @param chunkContext Set the chunk context * @return the repeat status * @throws Exception if there is a problem deleting the resources */ public RepeatStatus execute(StepContribution contribution, ChunkContext chunkContext) throws Exception { UUID uuid1 = UUID.randomUUID(); String splitFileName = harvesterSpoolDirectory + File.separator + uuid1.toString() + ".json"; UUID uuid2 = UUID.randomUUID(); String temporaryFileName = harvesterSpoolDirectory + File.separator + uuid2.toString() + ".json"; File temporaryFile = new File(temporaryFileName); File splitFile = new File(splitFileName); ExecutionContext executionContext = chunkContext.getStepContext().getStepExecution().getJobExecution().getExecutionContext(); String subsetRank = null; String subsetValue = null; if (subtribe != null) { subsetRank = "subtribe"; subsetValue = subtribe; } else if (tribe != null) { subsetRank = "tribe"; subsetValue = tribe; } else if (subfamily != null) { subsetRank = "subfamily"; subsetValue = subfamily; } else if (family != null) { subsetRank = "family"; subsetValue = family; } String queryString = null; if (subsetValue != null) { queryString = "select t.id from Taxon t left join t.acceptedNameUsage a where t.#subsetRank = :subsetValue or a.#subsetRank = :subsetValue"; queryString = queryString.replaceAll("#subsetRank", subsetRank); executionContext.put("index.taxon.subset.value", subsetValue); } else { queryString = "select t.id from MeasurementOrFact m join m.taxon t join m.annotations a where a.jobId = :jobId"; } executionContext.put("index.taxon.query", queryString); executionContext.put("temporary.file.name", temporaryFile.getAbsolutePath()); executionContext.put("split.file.name", splitFile.getAbsolutePath()); executionContext.putLong("job.execution.id", chunkContext.getStepContext().getStepExecution().getJobExecutionId()); return RepeatStatus.FINISHED; } }