/* * This is eMonocot, a global online biodiversity information resource. * * Copyright © 2011–2015 The Board of Trustees of the Royal Botanic Gardens, Kew and The University of Oxford * * eMonocot is free software: you can redistribute it and/or modify it under the terms of the * GNU Affero General Public License as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * eMonocot is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even * the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Affero General Public License for more details. * * The complete text of the GNU Affero General Public License is in the source repository as the file * ‘COPYING’. It is also available from <http://www.gnu.org/licenses/>. */ package org.emonocot.job.dwc.taxon; import org.emonocot.api.TaxonService; import org.emonocot.model.Taxon; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.batch.item.ItemProcessor; public class CalculateDerivedPropertiesProcessor implements ItemProcessor<Long, Taxon> { private static Logger logger = LoggerFactory.getLogger(CalculateDerivedPropertiesProcessor.class); private TaxonService taxonService; public void setTaxonService(TaxonService taxonService) { this.taxonService = taxonService; } @Override public Taxon process(Long id) throws Exception { Taxon taxon = taxonService.load(id, "taxon-page"); if(taxon.getTaxonRank() != null) { switch (taxon.getTaxonRank()) { case FAMILY: if(taxon.getFamily() == null) { taxon.setFamily(taxon.getScientificName()); } break; case ORDER: if(taxon.getOrder() == null) { taxon.setOrder(taxon.getScientificName()); } break; case Subfamily: if(taxon.getSubfamily() == null) { taxon.setSubfamily(taxon.getScientificName()); } break; case SUBGENUS: if(taxon.getSubgenus() == null) { taxon.setSubgenus(taxon.getScientificName()); } break; case Subtribe: if(taxon.getSubtribe() == null) { taxon.setSubtribe(taxon.getScientificName()); } break; case Tribe: if(taxon.getTribe() == null) { taxon.setTribe(taxon.getScientificName()); } break; default: break; } } for(Taxon higher : taxon.getHigherClassification()) { if(higher.getTaxonRank() != null) { switch (higher.getTaxonRank()) { case FAMILY: if(taxon.getFamily() == null) { taxon.setFamily(higher.getScientificName()); } break; case ORDER: if(taxon.getOrder() == null) { taxon.setOrder(higher.getScientificName()); } break; case Subfamily: if(taxon.getSubfamily() == null) { taxon.setSubfamily(higher.getScientificName()); } break; case Subtribe: if(taxon.getSubtribe() == null) { taxon.setSubtribe(higher.getScientificName()); } break; case Tribe: if(taxon.getTribe() == null) { taxon.setTribe(higher.getScientificName()); } break; default: break; } } } return taxon; } }