package picard.vcf;
/**
* Created by kbergin on 7/30/15.
*/
public enum GenotypeConcordanceStateCodes {
/**
* These codes allow for constants in the truth state enum and the call state enum to be compared.
* The final INCOMPARABLE_CODE is for Call States that are not reflected in the Truth State, so they can never match.
*/
MISSING_CODE,
HOM_REF_CODE,
HET_REF_VAR1_CODE,
HET_VAR1_VAR2_CODE,
HOM_VAR1_CODE,
NO_CALL_CODE,
LOW_GQ_CODE,
LOW_DP_CODE,
VC_FILTERED_CODE,
GT_FILTERED_CODE,
IS_MIXED_CODE,
INCOMPARABLE_CODE;
}