/*
* The MIT License
*
* Copyright (c) 2013 The Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
package picard.analysis;
import htsjdk.samtools.metrics.MetricBase;
import java.util.List;
/**
* Holds per-MetricAccumulationLevel metric information for the RRBS metrics. Required as the MultiLevelCollector
* is designed around having a single metrics object and we have two being calculated so RrbsMetricsCollector builds
* this object which can be teased apart downstream
*
* NB: This is purely for internal use, if used as a proper metric object it likely won't do what you want it to
*
* @author jgentry@broadinstitute.org
*/
class RrbsMetrics extends MetricBase {
private final RrbsSummaryMetrics summaryMetrics;
private final List<RrbsCpgDetailMetrics> detailMetrics;
public RrbsMetrics(final RrbsSummaryMetrics summaryMetrics, final List<RrbsCpgDetailMetrics> detailMetrics) {
this.summaryMetrics = summaryMetrics;
this.detailMetrics = detailMetrics;
}
public List<RrbsCpgDetailMetrics> getDetailMetrics() {
return detailMetrics;
}
public RrbsSummaryMetrics getSummaryMetrics() {
return summaryMetrics;
}
}