NetworkMapperTest.java

package org.cytoscape.rest;

import static org.junit.Assert.assertNotNull;

import java.io.BufferedReader;
import java.io.FileReader;
import java.io.IOException;

import org.junit.After;
import org.junit.Before;
import org.junit.Test;

public class NetworkMapperTest {

	private String jsonAsString = "";

//	private NetworkTestSupport support = new NetworkTestSupport();

	@Before
	public void setUp() throws Exception {
		readSamples();
	}

	private final void readSamples() throws IOException {
		FileReader in = new FileReader("./src/test/resources/json/galFiltered.json");
		BufferedReader br = new BufferedReader(in);
		String line;
		StringBuilder builder = new StringBuilder();
		while ((line = br.readLine()) != null)
			builder.append(line);

		br.close();
		in.close();

		jsonAsString = builder.toString();
	}

	@After
	public void tearDown() throws Exception {
	}

	@Test
	public void testTranslate() throws Exception {

		// Make sure sample data is available.
		assertNotNull(jsonAsString);

		// final JSON2CyNetworkTranslator translator = new
		// JSON2CyNetworkTranslator(support.getNetworkFactory());
		//
		// CyNetwork network = translator.translate(jsonAsString);
		//
		// assertNotNull(network);
		// assertEquals(331, network.getNodeCount());
		// assertEquals(362, network.getEdgeCount());
		//
		// Collection<CyRow> rows =
		// network.getDefaultNodeTable().getMatchingRows(CyNetwork.NAME,
		// "YGL134W");
		// assertNotNull(rows);
		// assertEquals(1, rows.size());
		// final CyRow row1 = rows.iterator().next();
		// final Long suid = row1.get(CyIdentifiable.SUID, Long.class);
		// CyNode node = network.getNode(suid);
		// assertNotNull(node);
		// assertEquals("YGL134W", network.getRow(node).get(CyNetwork.NAME,
		// String.class));
	}
}