/** * */ package plugins.kernel.roi.descriptor.measure; import icy.math.UnitUtil.UnitPrefix; import icy.roi.ROI; import icy.roi.ROI3D; import icy.roi.ROIDescriptor; import icy.sequence.Sequence; import icy.sequence.SequenceEvent; import icy.sequence.SequenceEvent.SequenceEventSourceType; import icy.util.StringUtil; /** * Volume ROI descriptor class (see {@link ROIDescriptor}) * * @author Stephane */ public class ROIVolumeDescriptor extends ROIDescriptor { public static final String ID = "Volume"; public ROIVolumeDescriptor() { super(ID, "Volume", Double.class); } @Override public String getDescription() { return "Volume"; } @Override public String getUnit(Sequence sequence) { if (sequence != null) return sequence.getBestPixelSizeUnit(3, 3).toString() + "m3"; return UnitPrefix.MICRO.toString() + "m3"; } @Override public boolean needRecompute(SequenceEvent change) { final SequenceEventSourceType sourceType = change.getSourceType(); if (sourceType == SequenceEventSourceType.SEQUENCE_DATA) return true; if (sourceType == SequenceEventSourceType.SEQUENCE_META) { final String metaName = (String) change.getSource(); return StringUtil.isEmpty(metaName) || StringUtil.equals(metaName, Sequence.ID_PIXEL_SIZE_X) || StringUtil.equals(metaName, Sequence.ID_PIXEL_SIZE_Y) || StringUtil.equals(metaName, Sequence.ID_PIXEL_SIZE_Z); } return false; } @Override public Object compute(ROI roi, Sequence sequence) throws UnsupportedOperationException { return Double.valueOf(computeVolume(roi, sequence)); } /** * Computes and returns the volume expressed in the unit of the descriptor (see {@link #getUnit(Sequence)}) for the * specified ROI.<br> * It may thrown an <code>UnsupportedOperationException</code> if the operation is not supported for that ROI. * * @param roi * the ROI on which we want to compute the volume * @param sequence * an optional sequence where the pixel size can be retrieved * @return the volume expressed in the unit of the descriptor (see {@link #getUnit(Sequence)}) * @throws UnsupportedOperationException * if the operation is not supported for this ROI */ public static double computeVolume(ROI roi, Sequence sequence) throws UnsupportedOperationException { return computeVolume(ROIInteriorDescriptor.computeInterior(roi), roi, sequence); } /** * Computes and returns the volume from a given number of interior points expressed in the * unit of the descriptor (see {@link #getUnit(Sequence)}) for the specified sequence and ROI.<br> * It may returns <code>Double.Nan</code> if the operation is not supported for that ROI. * * @param interiorPoints * the number of interior points (override the ROI value) * @param roi * the ROI we want to compute the volume * @param sequence * the input sequence used to retrieve operation unit by using pixel size * information. * @return the volume expressed in the unit of the descriptor (see {@link #getUnit(Sequence)}) * @throws UnsupportedOperationException * if the operation is not supported for this ROI */ public static double computeVolume(double interiorPoints, ROI roi, Sequence sequence) throws UnsupportedOperationException { try { // we restrict to ROI3D only if (!(roi instanceof ROI3D)) throw new UnsupportedOperationException(); return ROIInteriorDescriptor.computeInterior(interiorPoints, roi, sequence, 3); } catch (UnsupportedOperationException e) { throw new UnsupportedOperationException("Can't process " + ID + " calculation for ROI: '" + roi.getName() + "'"); } } }