/*
* ome.formats.model.TargetProcessor
*
*------------------------------------------------------------------------------
* Copyright (C) 2006-2008 University of Dundee. All rights reserved.
*
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along
* with this program; if not, write to the Free Software Foundation, Inc.,
* 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
*
*------------------------------------------------------------------------------
*/
package ome.formats.model;
import java.util.List;
import ome.util.LSID;
import omero.metadatastore.IObjectContainer;
import omero.model.Dataset;
import omero.model.IObject;
import omero.model.Image;
import omero.model.Plate;
import omero.model.Screen;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Processes the IObjectContainerStore and populates references for the
* linkage target object of choice.
*
* @author Chris Allan <callan at blackcat dot ca>
*
*/
public class TargetProcessor implements ModelProcessor {
/** Logger for this class */
private Logger log = LoggerFactory.getLogger(TargetProcessor.class);
/**
* Processes the OMERO client side metadata store.
* @param store OMERO metadata store to process.
* @throws ModelException If there is an error during processing.
*/
public void process(IObjectContainerStore store) throws ModelException {
IObject target = store.getUserSpecifiedTarget();
if (target == null) {
return;
}
List<IObjectContainer> containers = null;
if (target instanceof Dataset) {
containers = store.getIObjectContainers(Image.class);
} else if (target instanceof Screen) {
containers = store.getIObjectContainers(Plate.class);
} else {
throw new ModelException("Unable to handle target: " + target);
}
for (IObjectContainer container : containers) {
LSID targetLSID = new LSID(container.LSID);
LSID referenceLSID =
new LSID(String.format("%s:%d", target.getClass().getName(),
target.getId().getValue()));
store.addReference(targetLSID, referenceLSID);
}
}
}