/*
Copyright 2008-2010 Gephi
Authors : Mathieu Bastian <mathieu.bastian@gephi.org>
Website : http://www.gephi.org
This file is part of Gephi.
DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS HEADER.
Copyright 2011 Gephi Consortium. All rights reserved.
The contents of this file are subject to the terms of either the GNU
General Public License Version 3 only ("GPL") or the Common
Development and Distribution License("CDDL") (collectively, the
"License"). You may not use this file except in compliance with the
License. You can obtain a copy of the License at
http://gephi.org/about/legal/license-notice/
or /cddl-1.0.txt and /gpl-3.0.txt. See the License for the
specific language governing permissions and limitations under the
License. When distributing the software, include this License Header
Notice in each file and include the License files at
/cddl-1.0.txt and /gpl-3.0.txt. If applicable, add the following below the
License Header, with the fields enclosed by brackets [] replaced by
your own identifying information:
"Portions Copyrighted [year] [name of copyright owner]"
If you wish your version of this file to be governed by only the CDDL
or only the GPL Version 3, indicate your decision by adding
"[Contributor] elects to include this software in this distribution
under the [CDDL or GPL Version 3] license." If you do not indicate a
single choice of license, a recipient has the option to distribute
your version of this file under either the CDDL, the GPL Version 3 or
to extend the choice of license to its licensees as provided above.
However, if you add GPL Version 3 code and therefore, elected the GPL
Version 3 license, then the option applies only if the new code is
made subject to such option by the copyright holder.
Contributor(s):
Portions Copyrighted 2011 Gephi Consortium.
*/
package org.gephi.visualization.bridge;
import java.util.Arrays;
import org.gephi.graph.api.Column;
import org.gephi.graph.api.ColumnObserver;
import org.gephi.graph.api.Edge;
import org.gephi.graph.api.Graph;
import org.gephi.graph.api.GraphController;
import org.gephi.graph.api.GraphModel;
import org.gephi.graph.api.GraphObserver;
import org.gephi.graph.api.Node;
import org.gephi.visualization.GraphLimits;
import org.gephi.visualization.VizArchitecture;
import org.gephi.visualization.VizController;
import org.gephi.visualization.apiimpl.VizConfig;
import org.gephi.visualization.model.edge.EdgeModel;
import org.gephi.visualization.model.edge.EdgeModeler;
import org.gephi.visualization.model.node.NodeModel;
import org.gephi.visualization.model.node.NodeModeler;
import org.gephi.visualization.octree.Octree;
import org.gephi.visualization.opengl.AbstractEngine;
import org.gephi.visualization.text.TextManager;
import org.gephi.visualization.text.TextModelImpl;
import org.openide.util.Lookup;
/**
*
* @author Mathieu Bastian
*/
public class DataBridge implements VizArchitecture {
//Const
protected static final long ONEOVERPHI = 106039;
//Architecture
protected AbstractEngine engine;
protected GraphController controller;
protected TextManager textManager;
protected ColumnObserver[] nodeColumnObservers;
protected ColumnObserver[] edgeColumnObservers;
protected int nodeColumnHashCode;
protected int edgeColumnHashCode;
private VizConfig vizConfig;
private TextModelImpl textModel;
protected GraphLimits limits;
//Graph
protected GraphModel graphModel;
protected Graph graph;
protected GraphObserver observer;
//Data
protected NodeModel[] nodes;
protected EdgeModel[] edges;
@Override
public void initArchitecture() {
this.engine = VizController.getInstance().getEngine();
this.controller = Lookup.getDefault().lookup(GraphController.class);
this.vizConfig = VizController.getInstance().getVizConfig();
this.limits = VizController.getInstance().getLimits();
this.textManager = VizController.getInstance().getTextManager();
}
public synchronized NodeModel[] getNodeModelsForNodes(Node[] n) {
if (n == null) {
return null;
}
NodeModel[] models = new NodeModel[n.length];
for (int i = 0; i < n.length; i++) {
int storeId = n[i].getStoreId();
models[i] = storeId < nodes.length ? nodes[n[i].getStoreId()] : null;
}
return models;
}
public synchronized EdgeModel[] getEdgeModelsForEdges(Edge[] e) {
if (e == null) {
return null;
}
EdgeModel[] models = new EdgeModel[e.length];
for (int i = 0; i < e.length; i++) {
int storeId = e[i].getStoreId();
models[i] = storeId < edges.length ? edges[e[i].getStoreId()] : null;
}
return models;
}
public synchronized boolean updateWorld() {
boolean force = false;
if (graphModel != null) {
graphModel.getGraph().writeLock();
}
try {
if ((observer != null && observer.isDestroyed()) || (graphModel != null && graph.getView() != graphModel.getVisibleView())) {
if (observer != null && !observer.isDestroyed()) {
observer.destroy();
}
observer = null;
if (graphModel != null) {
graph = graphModel.getGraphVisible();
observer = graphModel.createGraphObserver(graph, false);
force = true;
}
}
} finally {
if (graphModel != null) {
graphModel.getGraph().readUnlockAll();
graphModel.getGraph().writeUnlock();
}
}
if (force || (observer != null && (observer.isNew() || observer.hasGraphChanged())) || hasColumnsChanged()) {
if (observer.isNew()) {
observer.hasGraphChanged();
}
NodeModeler nodeModeler = engine.getNodeModeler();
EdgeModeler edgeModeler = engine.getEdgeModeler();
Octree octree = engine.getOctree();
//Stats
int removedNodes = 0;
int addedNodes = 0;
int removedEdges = 0;
int addedEdges = 0;
graph.readLock();
try {
boolean isView = !graph.getView().isMainView();
for (int i = 0; i < nodes.length; i++) {
NodeModel node = nodes[i];
if (node != null && (node.getNode().getStoreId() == -1 || (isView && !graph.contains(node.getNode())))) {
//Removed
octree.removeNode(node);
nodes[i] = null;
removedNodes++;
}
}
for (Node node : graph.getNodes()) {
int id = node.getStoreId();
NodeModel model;
if (id >= nodes.length || nodes[id] == null) {
growNodes(id);
model = nodeModeler.initModel(node);
octree.addNode(model);
nodes[id] = model;
addedNodes++;
} else {
model = nodes[id];
}
textManager.refreshNode(graph, model, textModel);
}
for (int i = 0; i < edges.length; i++) {
EdgeModel edge = edges[i];
if (edge != null && (edge.getEdge().getStoreId() == -1 || (isView && !graph.contains(edge.getEdge())))) {
//Removed
int sourceId = edge.getEdge().getSource().getStoreId();
int targetId = edge.getEdge().getTarget().getStoreId();
NodeModel sourceModel = sourceId == -1 ? null : nodes[sourceId];
NodeModel targetModel = targetId == -1 ? null : nodes[targetId];
if (sourceModel != null) {
sourceModel.removeEdge(edge);
}
if (targetModel != null && sourceModel != targetModel) {
targetModel.removeEdge(edge);
}
edges[i] = null;
removedEdges++;
}
}
float minWeight = Float.MAX_VALUE;
float maxWeight = Float.MIN_VALUE;
for (Edge edge : graph.getEdges()) {
int id = edge.getStoreId();
EdgeModel model;
if (id >= edges.length || edges[id] == null) {
growEdges(id);
NodeModel sourceModel = nodes[edge.getSource().getStoreId()];
NodeModel targetModel = nodes[edge.getTarget().getStoreId()];
model = edgeModeler.initModel(edge, sourceModel, targetModel);
sourceModel.addEdge(model);
if (targetModel != sourceModel) {
targetModel.addEdge(model);
}
edges[id] = model;
addedEdges++;
} else {
model = edges[id];
}
float w = (float) edge.getWeight(graph.getView());
model.setWeight(w);
minWeight = Math.min(w, minWeight);
maxWeight = Math.max(w, maxWeight);
textManager.refreshEdge(graph, model, textModel);
}
if (!isView) {
limits.setMaxWeight(maxWeight);
limits.setMinWeight(minWeight);
}
} finally {
graph.readUnlockAll();
}
return true;
} else if (observer == null) {
Octree octree = engine.getOctree();
if (!octree.isEmpty()) {
octree.clear();
}
}
return false;
}
private boolean hasColumnsChanged() {
if (nodeColumnObservers != null && edgeColumnObservers != null) {
Column[] nodeColumns = textModel.getNodeTextColumns();
int nodeCode = Arrays.hashCode(nodeColumns);
if (nodeCode != nodeColumnHashCode) {
refreshNodeColumns(textModel);
return true;
}
Column[] edgeColumns = textModel.getEdgeTextColumns();
int edgeCode = Arrays.hashCode(edgeColumns);
if (edgeCode != edgeColumnHashCode) {
refreshEdgeColumns(textModel);
return true;
}
boolean nodeC = false, edgeC = false;
for (ColumnObserver c : nodeColumnObservers) {
nodeC = nodeC | c.hasColumnChanged();
}
for (ColumnObserver c : edgeColumnObservers) {
edgeC = edgeC | c.hasColumnChanged();
}
return nodeC || edgeC;
}
return false;
}
public synchronized void reset() {
graphModel = controller.getGraphModel();
if (graphModel != null) {
graph = graphModel.getGraphVisible();
graph.writeLock();
}
try {
if (observer != null && (graphModel == null || observer.getGraph() != graph)) {
if (!observer.isDestroyed()) {
observer.destroy();
}
observer = null;
}
} finally {
if (graphModel != null) {
graph.readUnlockAll();
graph.writeUnlock();
}
}
if (nodeColumnObservers != null) {
for (ColumnObserver c : nodeColumnObservers) {
if (!c.isDestroyed()) {
c.destroy();
}
}
nodeColumnObservers = null;
}
if (edgeColumnObservers != null) {
for (ColumnObserver c : edgeColumnObservers) {
if (!c.isDestroyed()) {
c.destroy();
}
}
edgeColumnObservers = null;
}
nodes = new NodeModel[10];
edges = new EdgeModel[10];
Octree octree = engine.getOctree();
if (!octree.isEmpty()) {
octree.clear();
}
if (graphModel != null) {
observer = graphModel.createGraphObserver(graph, false);
textModel = VizController.getInstance().getVizModel().getTextModel();
refreshNodeColumns(textModel);
refreshEdgeColumns(textModel);
}
}
private void refreshNodeColumns(TextModelImpl textModelImpl) {
if (nodeColumnObservers != null) {
for (ColumnObserver c : nodeColumnObservers) {
if (!c.isDestroyed()) {
c.destroy();
}
}
nodeColumnObservers = null;
}
Column[] nodeColumns = textModelImpl.getNodeTextColumns();
nodeColumnHashCode = Arrays.hashCode(nodeColumns);
nodeColumnObservers = new ColumnObserver[nodeColumns.length];
for (int i = 0; i < nodeColumns.length; i++) {
nodeColumnObservers[i] = nodeColumns[i].createColumnObserver(false);
}
}
private void refreshEdgeColumns(TextModelImpl textModelImpl) {
if (edgeColumnObservers != null) {
for (ColumnObserver c : edgeColumnObservers) {
if (!c.isDestroyed()) {
c.destroy();
}
}
edgeColumnObservers = null;
}
Column[] edgeColumns = textModelImpl.getEdgeTextColumns();
edgeColumnHashCode = Arrays.hashCode(edgeColumns);
edgeColumnObservers = new ColumnObserver[edgeColumns.length];
for (int i = 0; i < edgeColumns.length; i++) {
edgeColumnObservers[i] = edgeColumns[i].createColumnObserver(false);
}
}
public boolean isDirected() {
return graphModel != null && !graphModel.isUndirected();
}
public Graph getGraph() {
return graph;
}
private void growNodes(final int index) {
if (nodes == null) {
nodes = new NodeModel[10];
} else if (index >= nodes.length) {
final int newLength = (int) Math.min(Math.max((ONEOVERPHI * nodes.length) >>> 16, index + 1), Integer.MAX_VALUE);
final NodeModel t[] = new NodeModel[newLength];
System.arraycopy(nodes, 0, t, 0, nodes.length);
nodes = t;
}
}
private void growEdges(final int index) {
if (edges == null) {
edges = new EdgeModel[10];
} else if (index >= edges.length) {
final int newLength = (int) Math.min(Math.max((ONEOVERPHI * edges.length) >>> 16, index + 1), Integer.MAX_VALUE);
final EdgeModel t[] = new EdgeModel[newLength];
System.arraycopy(edges, 0, t, 0, edges.length);
edges = t;
}
}
}