/*******************************************************************************
* GenPlay, Einstein Genome Analyzer
* Copyright (C) 2009, 2014 Albert Einstein College of Medicine
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
* Authors: Julien Lajugie <julien.lajugie@einstein.yu.edu>
* Nicolas Fourel <nicolas.fourel@einstein.yu.edu>
* Eric Bouhassira <eric.bouhassira@einstein.yu.edu>
*
* Website: <http://genplay.einstein.yu.edu>
******************************************************************************/
package edu.yu.einstein.genplay.dataStructure.gene;
import edu.yu.einstein.genplay.dataStructure.chromosomeWindow.AbstractChromosomeWindow;
import edu.yu.einstein.genplay.util.HashCodeUtil;
/**
* This class provides a skeletal implementation of the {@link Gene} interface
* to minimize the effort required to implement this interface.
* @author Julien Lajugie
*/
public abstract class AbstractGene extends AbstractChromosomeWindow implements Gene {
/** Generated serial ID */
private static final long serialVersionUID = -3877949005491405885L;
@Override
public boolean equals(Object obj) {
if (this == obj) {
return true;
}
if (obj == null) {
return false;
}
if (getClass() != obj.getClass()) {
return false;
}
Gene other = (Gene) obj;
if (getName() == null) {
if (other.getName() != null) {
return false;
}
} else if (!getName().equals(other.getName())) {
return false;
}
if (getStrand() == null) {
if (other.getStrand() != null) {
return false;
}
} else if (!getStrand().equals(other.getStrand())) {
return false;
}
if (getStart() != other.getStart()) {
return false;
}
if (getStop() != other.getStop()) {
return false;
}
if (getScore() != other.getScore()) {
return false;
}
if (getUTR5Bound() != other.getUTR5Bound()) {
return false;
}
if (getUTR3Bound() != other.getUTR3Bound()) {
return false;
}
if (getExons() == null) {
if (other.getExons() != null) {
return false;
}
} else if (getExons().size() != other.getExons().size()) {
return false;
} else {
for (int i = 0; i < getExons().size(); i++) {
if (!getExons().get(i).equals(other.getExons().get(i))) {
return false;
}
}
}
return true;
}
@Override
public int hashCode() {
int hashCode = HashCodeUtil.SEED;
hashCode = HashCodeUtil.hash(hashCode, getName());
hashCode = HashCodeUtil.hash(hashCode, getStrand());
hashCode = HashCodeUtil.hash(hashCode, getStart());
hashCode = HashCodeUtil.hash(hashCode, getStop());
hashCode = HashCodeUtil.hash(hashCode, getScore());
hashCode = HashCodeUtil.hash(hashCode, getUTR5Bound());
hashCode = HashCodeUtil.hash(hashCode, getUTR3Bound());
hashCode = HashCodeUtil.hash(hashCode, getExons());
return hashCode;
}
}